Next Generation Sequencing Newsletter February 2013

Next Generation Sequencing Newsletter

February 2013

NextGenSeq@nature.com provides a feel for the current state of the art in next generation sequencing technologies and how these platforms are changing the face of biomedical research. The page hosts a collection of original research, commentary and reviews published by Nature Publishing Group. Sign up for monthly e-alerts from Next Generation Sequencing.

Highlighted articles Access these articles for FREE by visiting NextGenSeq@nature.com   The genetic landscape of high-risk neuroblastoma FREE Trevor J Pugh, Olena Morozova, Edward F Attiyeh, Shahab Asgharzadeh, Jun S Wei, Daniel Auclair, Scott L Carter, Kristian Cibulskis, Megan Hanna, Adam Kiezun, Jaegil Kim, Michael S Lawrence, Lee Lichenstein, Aaron McKenna, Chandra Sekhar Pedamallu, Alex H Ramos, Erica Shefler, Andrey Sivachenko, Carrie Sougnez, Chip Stewart, Adrian Ally, Inanc Birol, Readman Chiu, Richard D Corbett, Martin Hirst, Shaun D Jackman, Baljit Kamoh, Alireza Hadj Khodabakshi, Martin Krzywinski, Allan Lo, Richard A Moore, Karen L Mungall, Jenny Qian, Angela Tam, Nina Thiessen, Yongjun Zhao, Kristina A Cole, Maura Diamond, Sharon J Diskin, Yael P Mosse, Andrew C Wood, Lingyun Ji, Richard Sposto, Thomas Badgett, Wendy B London, Yvonne Moyer, Julie M Gastier-Foster, Malcolm A Smith, Jaime M Guidry Auvil, Daniela S Gerhard, Michael D Hogarty, Steven J M Jones, Eric S Lander, Stacey B Gabriel, Gad Getz, Robert C Seeger, Javed Khan, Marco A Marra, Matthew Meyerson & John M Maris Nature Genetics doi:10.1038/ng.2529   High-throughput sequencing of the paired human immunoglobulin heavy and light chain repertoire FREE Brandon J DeKosky, Gregory C Ippolito, Ryan P Deschner, Jason J Lavinder, Yariv Wine, Brandon M Rawlings, Navin Varadarajan, Claudia Giesecke, Thomas Dörner, Sarah F Andrews, Patrick C Wilson, Scott P Hunicke-Smith, C Grant Willson, Andrew D Ellington & George Georgiou Nature Biotechnology doi:10.1038/nbt.2492   Allelic mRNA expression imbalance in C-type lectins reveals a frequent regulatory SNP in the human surfactant protein A (SP-A) gene FREE A K Azad, A Curtis, A Papp, A Webb, D Knoell, W Sadee & L S Schlesinger Genes and Immunity doi:10.1038/gene.2012.61   Informed consent for whole-genome sequencing studies in the clinical setting. Proposed recommendations on essential content and process FREE Carmen Ayuso, José M Millán, Marta Mancheño & Rafael Dal-Ré European Journal of Human Genetics doi:10.1038/ejhg.2012.297 NPG journal-based collections of interest   Applications of next–generation sequencing (Series in Nature Reviews Genetics)   Focus on Next-Generation Sequencing (Supplement from Nature Biotechnology) Recent articles from NPG Access these articles by visiting NextGenSeq@nature.com   Analysis of alternative cleavage and polyadenylation by 3′ region extraction and deep sequencing Mainul Hoque, Zhe Ji, Dinghai Zheng, Wenting Luo, Wencheng Li, Bei You, Ji Yeon Park, Ghassan Yehia & Bin Tian Nature Methods doi:10.1038/nmeth.2288   The genomic landscape of hypodiploid acute lymphoblastic leukemia Linda Holmfeldt, Lei Wei, Ernesto Diaz-Flores, Michael Walsh, Jinghui Zhang, Li Ding, Debbie Payne-Turner, Michelle Churchman, Anna Andersson, Shann-Ching Chen, Kelly McCastlain, Jared Becksfort, Jing Ma, Gang Wu, Samir N Patel, Susan L Heatley, Letha A Phillips, Guangchun Song, John Easton, Matthew Parker, Xiang Chen, Michael Rusch, Kristy Boggs, Bhavin Vadodaria, Erin Hedlund, Christina Drenberg, Sharyn Baker, Deqing Pei, Cheng Cheng, Robert Huether, Charles Lu, Robert S Fulton, Lucinda L Fulton, Yashodhan Tabib, David J Dooling, Kerri Ochoa, Mark Minden, Ian D Lewis, L Bik To, Paula Marlton, Andrew W Roberts, Gordana Raca, Wendy Stock, Geoffrey Neale, Hans G Drexler, Ross A Dickins, David W Ellison, Sheila A Shurtleff, Ching-Hon Pui, Raul C Ribeiro, Meenakshi Devidas, Andrew J Carroll, Nyla A Heerema, Brent Wood, Michael J Borowitz, Julie M Gastier-Foster, Susana C Raimondi, Elaine R Mardis, Richard K Wilson, James R Downing, Stephen P Hunger, Mignon L Loh & Charles G Mullighan Nature Genetics doi:10.1038/ng.2532   HER2's new mutations Tim Fulmer Science-Business eXchange doi:10.1038/scibx.2013.26   Beyond the genomics blueprint: the 4th Human Variome Project Meeting, UNESCO, Paris, 2012 Maija R.J. Kohonen-Corish, Timothy D. Smith & Helen M. Robinson Genetics in Medicine doi:10.1038/gim.2012.174   The dynamics of LTR retrotransposon accumulation across 25 million years of panicoid grass evolution M C Estep, J D DeBarry & J L Bennetzen Heredity doi:10.1038/hdy.2012.99   Linking transcriptomic and genomic variation to growth in brook charr hybrids (Salvelinus fontinalis, Mitchill) B Bougas, E Normandeau, C Audet & L Bernatchez Heredity doi:10.1038/hdy.2012.117

You have been sent this Table of Contents Alert because you have opted in to receive it. You can change or discontinue your e-mail alerts at any time, by modifying your preferences on your nature.com account at: www.nature.com/nams/svc/myaccount (You will need to log in to be recognised as a nature.com registrant). For further technical assistance, please contact our registration department For print subscription enquiries, please contact our subscription department For other enquiries, please contact our feedback department Nature Publishing Group | 4 Crinan Street | London | N1 9XW | UK Nature Publishing Group's worldwide offices: London - Paris - Munich - New Delhi - Tokyo - Melbourne San Diego - San Francisco - Washington - New York - Boston Copyright Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.