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2016/09/28

Nature Communications - 28 September 2016

 
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28 September 2016 
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Palacios-Berraquero et al. demonstrate all-electrical generation of single photons in atomically thin transition metal dichalcogenides.
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A cholinergic-sympathetic pathway primes immunity in hypertension and mediates brain-to-spleen communication OPEN
Daniela Carnevale, Marialuisa Perrotta, Fabio Pallante, Valentina Fardella, Roberta Iacobucci, Stefania Fardella, Lorenzo Carnevale, Raimondo Carnevale, Massimiliano De Lucia, Giuseppe Cifelli and Giuseppe Lembo
Immune system participates in the development of high blood pressure. Here the authors show that cholinergic-sympathetic pathway mediated by the α7nAChR receptor and the activation of splenic T cells prime immunity during hypertension and that selective splenic denervation protects against the onset of hypertension in mice.
27 September 2016 | doi: 10.1038/ncomms13035

Tissue engineering of acellular vascular grafts capable of somatic growth in young lambs OPEN
Zeeshan Syedain, Jay Reimer, Matthew Lahti, James Berry, Sandra Johnson and Robert T. Tranquillo
Current vessel grafts must be surgically replaced when the recipient outgrows them. Here, Syedain et al. bioengineer a tube of acellular matrix produced from sheep fibroblasts that is capable of cellularizaton and somatic growth when transplanted into growing lambs, eliminating the need for multiple graft surgeries.
27 September 2016 | doi: 10.1038/ncomms12951

Bony cranial ornamentation linked to rapid evolution of gigantic theropod dinosaurs OPEN
Terry A. Gates, Chris Organ and Lindsay E. Zanno
Many of the theropod dinosaurs, the group including Tyrannosaurus rex, had bony ornamentation on their skulls. Here, Gates et al. show that such ornaments are associated with greater body size and accelerated body size evolution in theropods; however, these relationships are absent in the maniraptoriform dinosaurs, which had evolved pennaceous feathers.
27 September 2016 | doi: 10.1038/ncomms12931

Super-elastic and fatigue resistant carbon material with lamellar multi-arch microstructure OPEN
Huai-Ling Gao, Yin-Bo Zhu, Li-Bo Mao, Feng-Chao Wang, Xi-Sheng Luo, Yang-Yi Liu, Yang Lu, Zhao Pan, Jin Ge, Wei Shen, Ya-Rong Zheng, Liang Xu, Lin-Jun Wang, Wei-Hong Xu, Heng-An Wu and Shu-Hong Yu
Low-density compressible materials often suffer from fatigue-induced failure or limited elasticity. Here, the authors create a hierarchical multi-arch carbon material that achieves high compressibility, superior elasticity and fatigue resistance simultaneously, inspired by properties of arches in daily life.
27 September 2016 | doi: 10.1038/ncomms12920

Programming temporal shapeshifting OPEN
Xiaobo Hu, Jing Zhou, Mohammad Vatankhah-Varnosfaderani, William F. M. Daniel, Qiaoxi Li, Aleksandr P. Zhushma, Andrey V. Dobrynin and Sergei S. Sheiko
Actuation of shape-shifting materials has typically required an external trigger. Here, the authors design a shape-memory hydrogel, regulated by a dual network of covalent and temporary hydrogen bonds, whose actuations are encoded by an intrinsic temporal mechanism.
27 September 2016 | doi: 10.1038/ncomms12919

Megacity pumping and preferential flow threaten groundwater quality OPEN
Mahfuzur R. Khan, Mohammad Koneshloo, Peter S. K. Knappett, Kazi M. Ahmed, Benjamin C. Bostick, Brian J. Mailloux, Rajib H. Mozumder, Anwar Zahid, Charles F. Harvey, Alexander van Geen and Holly A. Michael
Megacities rely on groundwater from aquifers that may be over-exploited and be at risk of contamination. Khan et al. evaluate the complex aquifers supplying Dhaka, Bangladesh and show that extensive groundwater pumping could lead to unpredictable future arsenic contamination in deep aquifers outside the city.
27 September 2016 | doi: 10.1038/ncomms12833

Shortcuts to adiabaticity by counterdiabatic driving for trapped-ion displacement in phase space OPEN
Shuoming An, Dingshun Lv, Adolfo del Campo and Kihwan Kim
The application of adiabatic protocols in quantum technologies is limited due to the detrimental action of decoherence. Here the authors demonstrate a shortcut to adiabaticity via counterdiabatic driving in a trapped ion system.
27 September 2016 | doi: 10.1038/ncomms12999

MicroRNA-155 influences B-cell function through PU.1 in rheumatoid arthritis OPEN
Stefano Alivernini, Mariola Kurowska-Stolarska, Barbara Tolusso, Roberta Benvenuto, Aziza Elmesmari, Silvia Canestri, Luca Petricca, Antonella Mangoni, Anna Laura Fedele, Clara Di Mario, Maria Rita Gigante, Elisa Gremese, Iain B. McInnes and Gianfranco Ferraccioli
MiR-155 is thought to inhibit PU.1 and thereby drive antigen-induced B-cell maturation. Here the authors show that patients with rheumatoid arthritis have high B-cell miR-155 expression and that an antagomir can rescue PU.1 expression, suggesting potential therapeutic avenues to treat rheumatoid arthritis.
27 September 2016 | doi: 10.1038/ncomms12970

Observation of a new superfluid phase for 3He embedded in nematically ordered aerogel OPEN
N. Zhelev, M. Reichl, T. S. Abhilash, E. N. Smith, K. X. Nguyen, E. J. Mueller and J. M. Parpia
Anisotropic disorder is predicted to change the stability of the superfluid state in 3He and leads to new phases. Here, Zhelev et al. report signatures of the phase transitions in 3He confined in an extremely anisotropic ordered aerogel including a new polar phase.
27 September 2016 | doi: 10.1038/ncomms12975

Observation of unusual topological surface states in half-Heusler compounds LnPtBi (Ln=Lu, Y) OPEN
Z. K. Liu, L. X. Yang, S.-C. Wu, C. Shekhar, J. Jiang, H. F. Yang, Y. Zhang, S.-K. Mo, Z. Hussain, B. Yan, C. Felser and Y. L. Chen
Heusler compounds have been predicted to host topological order with other emergent properties, which yet awaits for experimental evidence. Here, Liu et al. report a direct observation of topological surface states on half-Heusler compounds LnPtBi.
27 September 2016 | doi: 10.1038/ncomms12924

The mechanism of eutectic growth in highly anisotropic materials OPEN
Ashwin J. Shahani, Xianghui Xiao and Peter W. Voorhees
The origins of non-periodic growth features observed in irregular eutectics have been a source of controversy. Here authors use time-resolved X-ray microtomography during eutectic growth of an alloy to show how competing models can be extended and reconciled.
27 September 2016 | doi: 10.1038/ncomms12953

Carbene-catalysed reductive coupling of nitrobenzyl bromides and activated ketones or imines via single-electron-transfer process OPEN
Bao-Sheng Li, Yuhuang Wang, Rupert S. J. Proctor, Yuexia Zhang, Richard D. Webster, Song Yang, Baoan Song and Yonggui Robin Chi
Benzyl bromides can be activated for radical reactions by photocatalytic single electron transfer. Here the authors show that N-heterocyclic carbenes are also capable of activating this pathway for nitrobenzyl bromides, and that the radical intermediates can add to the carbonyl group of ketones.
27 September 2016 | doi: 10.1038/ncomms12933

Quantifying microstructural dynamics and electrochemical activity of graphite and silicon-graphite lithium ion battery anodes OPEN
Patrick Pietsch, Daniel Westhoff, Julian Feinauer, Jens Eller, Federica Marone, Marco Stampanoni, Volker Schmidt and Vanessa Wood
Tomographic imaging of graphite-based anodes is challenging due to weak X-ray attenuation contrast. Here, the authors use operando propagation-based phase contrast tomography and digital volume correlation to study the electrochemical activity and microstructural dynamics in (silicon−) graphite electrodes.
27 September 2016 | doi: 10.1038/ncomms12909

Population and hierarchy of active species in gold iron oxide catalysts for carbon monoxide oxidation OPEN
Qian He, Simon J. Freakley, Jennifer K. Edwards, Albert F. Carley, Albina Y. Borisevich, Yuki Mineo, Masatake Haruta, Graham J. Hutchings and Christopher J. Kiely
The identity of active species in supported gold catalysts for low-temperature carbon monoxide oxidation remains an open question. Here, the authors look at the catalytic behaviours of supported catalysts prepared under different conditions and correlate the populations of various species with activity.
27 September 2016 | doi: 10.1038/ncomms12905

CARD9 negatively regulates NLRP3-induced IL-1β production on Salmonella infection of macrophages OPEN
Milton Pereira, Panagiotis Tourlomousis, John Wright, Tom P. Monie and Clare E. Bryant
IL-1β is important for control of bacterial infections, but when deregulated can lead to excessive inflammation. The authors show that the adaptor protein CARD9 suppresses levels of IL-1β and is downregulated during S. Typhimurium infection, thus facilitating an inflammatory response
27 September 2016 | doi: 10.1038/ncomms12874

An electrical analogy to Mie scattering OPEN
José M. Caridad, Stephen Connaughton, Christian Ott, Heiko B. Weber and Vojislav Krstić
Until now experimental evidence of an electrical analogy to Mie scattering is lacking. Here, Caridad and Krstić et al. present an experimental demonstration of an electrical analogue to Mie scattering by using graphene as conductor, and circular potentials arranged in a canted two-dimensional array.
27 September 2016 | doi: 10.1038/ncomms12894

Platelet clearance via shear-induced unfolding of a membrane mechanoreceptor OPEN
Wei Deng, Yan Xu, Wenchun Chen, David S. Paul, Anum K. Syed, Matthew A. Dragovich, Xin Liang, Philip Zakas, Michael C. Berndt, Jorge Di Paola, Jerry Ware, Francois Lanza, Christopher B. Doering, Wolfgang Bergmeier, X. Frank Zhang and Renhao Li
The platelets detect and respond to shear stress generated by blood flow. Here the authors show that the binding of the soluble von Willebrand factor to its receptor GPIba under physiological shear stress induces receptor's domain unfolding on the platelet and signalling into the platelet, leading to platelets clearance.
27 September 2016 | doi: 10.1038/ncomms12863

14-3-3ζ regulates the mitochondrial respiratory reserve linked to platelet phosphatidylserine exposure and procoagulant function OPEN
Simone M. Schoenwaelder, Roxane Darbousset, Susan L. Cranmer, Hayley S. Ramshaw, Stephanie L. Orive, Sharelle Sturgeon, Yuping Yuan, Yu Yao, James R. Krycer, Joanna Woodcock, Jessica Maclean, Stuart Pitson, Zhaohua Zheng, Darren C. Henstridge, Dianne van der Wal, Elizabeth E. Gardiner, Michael C. Berndt, Robert K. Andrews, David E. James, Angel F. Lopez et al.
Platelets express negatively charged phosphatidylserine (PS) on their plasma membrane when propagating coagulation within a developing thrombus. Here the authors show that an adaptor protein 14-3-3 regulates mitochondrial function and PS exposure and thus platelet procoagulant activity, promising a new therapy to reduce thrombosis.
27 September 2016 | doi: 10.1038/ncomms12862

Multi-pass microscopy OPEN
Thomas Juffmann, Brannon B. Klopfer, Timmo L.I. Frankort, Philipp Haslinger and Mark A. Kasevich
Low-damage and high-precision imaging can be achieved by passing the same probe photons through the specimen more than once, and this has been previously achieved in double-pass transmission microscopy. Here, the authors generalize this idea to full-field multi-pass microscopy using a self-imaging cavity.
27 September 2016 | doi: 10.1038/ncomms12858

Twister ribozymes as highly versatile expression platforms for artificial riboswitches OPEN
Michele Felletti, Julia Stifel, Lena A. Wurmthaler, Sophie Geiger and Jörg S. Hartig
Twister ribozymes are small endonucleolytic RNA motifs. Here the authors develop twister ribozymes into RNA logic gates and cross-species synthetic genetic regulators.
27 September 2016 | doi: 10.1038/ncomms12834

Protein kinase D regulates positive selection of CD4+ thymocytes through phosphorylation of SHP-1 OPEN
Eri Ishikawa, Hidetaka Kosako, Tomoharu Yasuda, Masaki Ohmuraya, Kimi Araki, Tomohiro Kurosaki, Takashi Saito and Sho Yamasaki
The three isoforms of protein kinase D (PKD) have important but often redundant roles in cell signalling. Here the authors show, by generating PKD2/3 double-deficient mice, that PKD is essential for TCR signalling in thymocytes, and identify SHP-1 as a PKD target critical for development of CD4+ T cells.
27 September 2016 | doi: 10.1038/ncomms12756

Loss of RNA expression and allele-specific expression associated with congenital heart disease OPEN
David M. McKean, Jason Homsy, Hiroko Wakimoto, Neil Patel, Joshua Gorham, Steven R. DePalma, James S. Ware, Samir Zaidi, Wenji Ma, Nihir Patel, Richard P. Lifton, Wendy K. Chung, Richard Kim, Yufeng Shen, Martina Brueckner, Elizabeth Goldmuntz, Andrew J. Sharp, Christine E. Seidman, Bruce D. Gelb and J. G. Seidman et al.
Congenital heart disease (CHD) is a disorder that occurs in ∼1% of live births. Here the authors describe a genome-wide allele-specific expression analyses in CHD patients, identifying five new genes involved in CHD and showing that paternally-expressed imprinted genes are monoallelic, while maternally-expressed imprinted genes are biallelic.
27 September 2016 | doi: 10.1038/ncomms12824

Molecular determinants for the strictly compartmentalized expression of kainate receptors in CA3 pyramidal cells OPEN
Sabine Fièvre, Mario Carta, Ingrid Chamma, Virginie Labrousse, Olivier Thoumine and Christophe Mulle
Kainate receptors are selectively found at CA3-mossy fibre synapses, although the mechanisms regulating this compartmentalisation have yet to be determined. Here, the authors find KAR segregation is dependent on the amount of GluK2a protein and an interaction between the GluK2 C-terminal domain and N-cadherin.
27 September 2016 | doi: 10.1038/ncomms12738

Satellite RNAs promote pancreatic oncogenic processes via the dysfunction of YBX1 OPEN
Takahiro Kishikawa, Motoyuki Otsuka, Takeshi Yoshikawa, Motoko Ohno, Hideaki Ijichi and Kazuhiko Koike
Satellite RNAs are aberrantly transcribed during pancreatic cancer progression. Here, the authors show that major satellite RNA binds to the multifunctional protein YBX1 in the cytoplasm and induces mutations in nuclear and mitochondrial DNA by preventing YBX1 stress-induced intracellular translocation.
26 September 2016 | doi: 10.1038/ncomms13006

Atomically thin quantum light-emitting diodes OPEN
Carmen Palacios-Berraquero, Matteo Barbone, Dhiren M. Kara, Xiaolong Chen, Ilya Goykhman, Duhee Yoon, Anna K. Ott, Jan Beitner, Kenji Watanabe, Takashi Taniguchi, Andrea C. Ferrari and Mete Atatüre
Atomically thin transition metal dichalcogenides hold promise as scalable single-photon sources. Here, the authors demonstrate all-electrical, single-photon generation in tungsten disulphide and diselenide, achieving charge injection into the layers, containing quantum emitters.
26 September 2016 | doi: 10.1038/ncomms12978

The tobacco-specific carcinogen-operated calcium channel promotes lung tumorigenesis via IGF2 exocytosis in lung epithelial cells OPEN
Hye-Jin Boo, Hye-Young Min, Hyun-Ji Jang, Hye Jeong Yun, John Kendal Smith, Quanri Jin, Hyo-Jong Lee, Diane Liu, Hee-Seok Kweon, Carmen Behrens, J. Jack Lee, Ignacio I. Wistuba, Euni Lee, Waun Ki Hong and Ho-Young Lee
The binding of tobacco-specific carcinogen 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone (NNK) to nicotinic acetylcholine receptors (nAChRs) induces calcium signalling. Here the authors show that NKK-induced calcium influx in airway epithelial cells triggers IGF2 secretion and tumourigenesis.
26 September 2016 | doi: 10.1038/ncomms12961

See–saw relationship of the Holocene East Asian–Australian summer monsoon OPEN
Deniz Eroglu, Fiona H. McRobie, Ibrahim Ozken, Thomas Stemler, Karl-Heinz Wyrwoll, Sebastian F. M. Breitenbach, Norbert Marwan and Jürgen Kurths
Irregular sampling of palaeoproxies can result in the misinterpretation of environmental records. Here, the authors propose a new time series analysis method for irregularly sampled data, and reveal a see-saw relationship between the East Asian and Indonesian–Australian summer monsoons during the Holocene.
26 September 2016 | doi: 10.1038/ncomms12929

Breast cancer genome and transcriptome integration implicates specific mutational signatures with immune cell infiltration OPEN
Marcel Smid, F. Germán Rodríguez-González, Anieta M. Sieuwerts, Roberto Salgado, Wendy J. C. Prager-Van der Smissen, Michelle van der Vlugt-Daane, Anne van Galen, Serena Nik-Zainal, Johan Staaf, Arie B. Brinkman, Marc J. van de Vijver, Andrea L. Richardson, Aquila Fatima, Kim Berentsen, Adam Butler, Sancha Martin, Helen R. Davies, Reno Debets, Marion E. Meijer-Van Gelder, Carolien H. M. van Deurzen et al.
Recent studies using in depth DNA sequencing techniques led to the identification of cancer driver genes but mainly focused on the effect on their expression. Here, the authors analyse 266 cases of breast cancer and report gene expression signatures associated with the number and character of signature mutations.
26 September 2016 | doi: 10.1038/ncomms12910

FHF-independent conduction of action potentials along the leak-resistant cerebellar granule cell axon OPEN
Katarzyna Dover, Christopher Marra, Sergio Solinas, Marko Popovic, Sathyaa Subramaniyam, Dejan Zecevic, Egidio D’Angelo and Mitchell Goldfarb
FHFs are known to regulate voltage-gated sodium channels (NaVs). Here, the authors compare the role of FHFs in cerebellar granule cell propagation, and find NaVs in the distal axon function independently of FHFs, allowing for faster inactivation rates and reducing energy demands during repetitive spiking.
26 September 2016 | doi: 10.1038/ncomms12895

Nutrient enrichment induces dormancy and decreases diversity of active bacteria in salt marsh sediments OPEN
Patrick J. Kearns, John H. Angell, Evan M. Howard, Linda A. Deegan, Rachel H. R. Stanley and Jennifer L. Bowen
Increased anthropogenic nitrogen inputs into the biosphere are fundamentally altering ecosystems worldwide. Here, Kearns et al. show that a decade of nitrogen additions to salt marshes reduces the proportion of active microorganisms, despite no net change to the total microbial community.
26 September 2016 | doi: 10.1038/ncomms12881

FMRP regulates an ethanol-dependent shift in GABABR function and expression with rapid antidepressant properties OPEN
Sarah A. Wolfe, Emily R. Workman, Chelcie F. Heaney, Farr Niere, Sanjeev Namjoshi, Luisa P. Cacheaux, Sean P. Farris, Michael R. Drew, Boris V. Zemelman, R. Adron Harris and Kimberly F. Raab-Graham
Alcohol is thought to lead to neuroadaptive changes, although the underlying molecular mechanisms are unclear. Here, the authors find ethanol treatment alters GABAB-receptor expression via fragile-X mental retardation protein in mice, leading to antidepressant-like behaviours.
26 September 2016 | doi: 10.1038/ncomms12867

Structure–function insights reveal the human ribosome as a cancer target for antibiotics OPEN
Alexander G. Myasnikov, S. Kundhavai Natchiar, Marielle Nebout, Isabelle Hazemann, Véronique Imbert, Heena Khatter, Jean-François Peyron and Bruno P. Klaholz
The ribosome of bacteria and other unicellular pathogens is a common target for antibiotic drugs. Here the authors determine a structure of the human ribosome bound to the translation inhibitor cycloheximide, and provide evidence that targeting the ribosome is a promising avenue for cancer therapy.
26 September 2016 | doi: 10.1038/ncomms12856

The RNA-binding protein vigilin regulates VLDL secretion through modulation of Apob mRNA translation OPEN
Mehrpouya B. Mobin, Stefanie Gerstberger, Daniel Teupser, Benedetta Campana, Klaus Charisse, Markus H. Heim, Muthiah Manoharan, Thomas Tuschl and Markus Stoffel
RNA-binding proteins (RBP) are an emerging group of post-translational regulators. Here the authors show that the RBP vigilin regulates translation of mRNA encoding for proatherogenic proteins—apoB, apoC-III and fibronectin—representing a potential therapeutic target in cardiovascular diseases.
26 September 2016 | doi: 10.1038/ncomms12848

Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd OPEN
Zichen Wang, Caroline D. Monteiro, Kathleen M. Jagodnik, Nicolas F. Fernandez, Gregory W. Gundersen, Andrew D. Rouillard, Sherry L. Jenkins, Axel S. Feldmann, Kevin S. Hu, Michael G. McDermott, Qiaonan Duan, Neil R. Clark, Matthew R. Jones, Yan Kou, Troy Goff, Holly Woodland, Fabio M R. Amaral, Gregory L. Szeto, Oliver Fuchs, Sophia M. Schüssler-Fiorenza Rose et al.
A wealth of gene expression data is publicly available, yet is little use without additional human curation. Ma’ayan and colleagues report a crowdsourcing project involving over 70 participants to annotate and analyse thousands of human disease-related gene expression datasets.
26 September 2016 | doi: 10.1038/ncomms12846

The structural basis for CD36 binding by the malaria parasite OPEN
Fu-Lien Hsieh, Louise Turner, Jani Reddy Bolla, Carol V. Robinson, Thomas Lavstsen and Matthew K. Higgins
Targeting of the CD36 scavenger receptor by the malaria parasite effector PfEMP1 prevents splenic clearance of infected erythrocytes. Here, the authors propose that diverse PfEMP1 achieve this by binding to a conserved phenylalanine residue in CD36 that is also required for lipoprotein binding.
26 September 2016 | doi: 10.1038/ncomms12837

Optimization of hierarchical structure and nanoscale-enabled plasmonic refraction for window electrodes in photovoltaics OPEN
Bing Han, Qiang Peng, Ruopeng Li, Qikun Rong, Yang Ding, Eser Metin Akinoglu, Xueyuan Wu, Xin Wang, Xubing Lu, Qianming Wang, Guofu Zhou, Jun-Ming Liu, Zhifeng Ren, Michael Giersig, Andrzej Herczynski, Krzysztof Kempa and Jinwei Gao
In photovoltaics window electrodes must display uniform current transport, as well as high light transmission from the substrate. Here, Han et al. show that quasi-fractal metallic networks provide a practical realization of an electrode structure with an optimal surface coverage and a uniform current density.
26 September 2016 | doi: 10.1038/ncomms12825

Ferroelectricity by Bose–Einstein condensation in a quantum magnet OPEN
S. Kimura, K. Kakihata, Y. Sawada, K. Watanabe, M. Matsumoto, M. Hagiwara and H. Tanaka
Magnons, quantized spin excitations in magnetic materials, may undergo Bose-Einstein condensation into a macroscopic correlated quantum state at low temperature. Here, the authors demonstrate how magnon condensation in quantum magnet TlCuCl3 generates an electrical polarization.
26 September 2016 | doi: 10.1038/ncomms12822

Real-time encoding and compression of neuronal spikes by metal-oxide memristors OPEN
Isha Gupta, Alexantrou Serb, Ali Khiat, Ralf Zeitler, Stefano Vassanelli and Themistoklis Prodromakis
The need for intelligent compression of big data, for example in neuroscience, has sparked interest in neuromorphic data processing. Here, Gupta et al. use memristors as event integrators to encode and compress neuronal spiking activity recorded by multi-electrode arrays.
26 September 2016 | doi: 10.1038/ncomms12805

The lncRNA landscape of breast cancer reveals a role for DSCAM-AS1 in breast cancer progression OPEN
Yashar S. Niknafs, Sumin Han, Teng Ma, Corey Speers, Chao Zhang, Kari Wilder-Romans, Matthew K. Iyer, Sethuramasundaram Pitchiaya, Rohit Malik, Yasuyuki Hosono, John R. Prensner, Anton Poliakov, Udit Singhal, Lanbo Xiao, Steven Kregel, Ronald F. Siebenaler, Shuang G. Zhao, Michael Uhl, Alexander Gawronski, Daniel F. Hayes et al.
LncRNAs have been associated with cancer. Here, the authors carry out a systematic review of lncRNAs in breast cancer and show that DSCAM-AS1 is highly expressed in oestrogen receptor positive tumours and enhances cancer through an interaction with hnRNPL; and is also associated with tamoxifen resistance.
26 September 2016 | doi: 10.1038/ncomms12791

Sub-molecular modulation of a 4f driven Kondo resonance by surface-induced asymmetry OPEN
Ben Warner, Fadi El Hallak, Nicolae Atodiresei, Philipp Seibt, Henning Prüser, Vasile Caciuc, Michael Waters, Andrew J. Fisher, Stefan Blügel, Joris van Slageren and Cyrus F. Hirjibehedin
In the Kondo effect, a bath of conduction electrons screens a localized magnetic moment. Here, the authors demonstrate Kondo screening of a normally isolated 4f-like moment in a magnetic molecule on a Cu(001) surface that is modulated by strong ligand-mediated coupling.
26 September 2016 | doi: 10.1038/ncomms12785

Direct-write nanoscale printing of nanogranular tunnelling strain sensors for sub-micrometre cantilevers OPEN
Maja Dukic, Marcel Winhold, Christian H. Schwalb, Jonathan D. Adams, Vladimir Stavrov, Michael Huth and Georg E. Fantner
Reducing the size of cantilever-based sensors increases the sensitivity and detection speed of techniques such as atomic force microscopy. Here, the authors demonstrate a nanomechanical readout method that can be easily scaled down in size by using electron co-tunnelling through a nanogranular metal.
26 September 2016 | doi: 10.1038/ncomms12487

An imbalance between specialized pro-resolving lipid mediators and pro-inflammatory leukotrienes promotes instability of atherosclerotic plaques OPEN
Gabrielle Fredman, Jason Hellmann, Jonathan D. Proto, George Kuriakose, Romain A. Colas, Bernhard Dorweiler, E. Sander Connolly, Robert Solomon, David M. Jones, Eric J. Heyer, Matthew Spite and Ira Tabas
Atherosclerosis progression is linked to inflammatory processes in the blood vessel wall. Here, the authors show that, with the progression of atherosclerosis, the resolution of inflammation is impaired as the result of an imbalance between specialized pro-resolving lipid mediators and leukotrienes.
23 September 2016 | doi: 10.1038/ncomms12859

Intercalated water layers promote thermal dissipation at bio–nano interfaces OPEN
Yanlei Wang, Zhao Qin, Markus J. Buehler and Zhiping Xu
Thermal management is important for designing bio-nano interfaces for biosensing and thermotherapic applications. Here the authors perform simulations showing that nm-thick water layers between graphene and cell membranes display layered ordering, promoting interfacial thermal coupling and thermal dissipation.
23 September 2016 | doi: 10.1038/ncomms12854

A bead-based western for high-throughput cellular signal transduction analyses OPEN
Fridolin Treindl, Benjamin Ruprecht, Yvonne Beiter, Silke Schultz, Anette Döttinger, Annette Staebler, Thomas O. Joos, Simon Kling, Oliver Poetz, Tanja Fehm, Hans Neubauer, Bernhard Kuster and Markus F. Templin
Dissecting cellular signalling requires the analysis of large numbers of proteins. Here the authors describe DigiWest, a high-throughput protein detection method that combines the concept of western and widely-used bead array systems that allows rapid quantification of hundreds of specific proteins.
23 September 2016 | doi: 10.1038/ncomms12852

Primary thermometry triad at 6 mK in mesoscopic circuits OPEN
Z. Iftikhar, A. Anthore, S. Jezouin, F. D. Parmentier, Y. Jin, A. Cavanna, A. Ouerghi, U. Gennser and F. Pierre
Mesoscopic electrical circuits are an ideal platform to explore quantum phenomena, but this requires cooling the electrons to very low temperature, which is challenging. Here, the authors employ three different in situ thermometers to report electronic quantum transport at 6mK in a micrometer-scale circuit.
23 September 2016 | doi: 10.1038/ncomms12908

Hazardous thunderstorm intensification over Lake Victoria OPEN
Wim Thiery, Edouard L. Davin, Sonia I. Seneviratne, Kristopher Bedka, Stef Lhermitte and Nicole P. M. van Lipzig
Thunderstorm activity over Lake Victoria poses a threat to human life, yet little is known about their evolution under climate change. Here, using satellite observations and high-resolution modelling, the authors project an increase in precipitation extremes over Lake Victoria, twice that of surrounding land.
23 September 2016 | doi: 10.1038/ncomms12786

Low-oxygen waters limited habitable space for early animals OPEN
R. Tostevin, R. A. Wood, G. A. Shields, S. W. Poulton, R. Guilbaud, F. Bowyer, A. M. Penny, T. He, A. Curtis, K. H. Hoffmann and M. O. Clarkson
The importance of oxygen in supporting early animal ecosystems is unclear because most proxies are unable to distinguish well-oxygenated from intermediate waters. Here, the authors show that early skeletal animals were restricted to well-oxygenated habitats, suggesting they had a high metabolic oxygen demand.
23 September 2016 | doi: 10.1038/ncomms12818

Disparate acidification and calcium carbonate desaturation of deep and shallow waters of the Arctic Ocean OPEN
Yiming Luo, Bernard P. Boudreau and Alfonso Mucci
Anthropogenic CO2 is acidifying the Arctic Ocean surface, with current models predicting downward penetration to deep waters. Here, based on an alternative model supported by available saturation data, the authors show simultaneous acidification of both surface and deep waters.
23 September 2016 | doi: 10.1038/ncomms12821

Transport of a kinesin-cargo pair along microtubules into dendritic spines undergoing synaptic plasticity OPEN
Derrick P. McVicker, Adam M. Awe, Karl E. Richters, Rebecca L. Wilson, Diana A. Cowdrey, Xindao Hu, Edwin R. Chapman and Erik W. Dent
Transport of cargo into dendritic spines is required for synaptic plasticity. McVicker et al. describe a method of activity-dependent transport of a kinesin KIF1A and its cargo synaptotagmin-IV along microtubules that are transiently polymerized into dendritic spines.
23 September 2016 | doi: 10.1038/ncomms12741

Subnatural-linewidth biphotons from a Doppler-broadened hot atomic vapour cell OPEN
Chi Shu, Peng Chen, Tsz Kiu Aaron Chow, Lingbang Zhu, Yanhong Xiao, M.M.T. Loy and Shengwang Du
Quantum-network protocols based on photon-atom interfaces have stimulated a great demand for single-photon sources with narrow bandwidth. Here the authors report the generation of entangled photon pairs with controllable bandwidth and coherence time from a Doppler-broadened hot atomic vapour cell.
23 September 2016 | doi: 10.1038/ncomms12783

The Macronova in GRB 050709 and the GRB-macronova connection OPEN
Zhi-Ping Jin, Kenta Hotokezaka, Xiang Li, Masaomi Tanaka, Paolo D’Avanzo, Yi-Zhong Fan, Stefano Covino, Da-Ming Wei and Tsvi Piran
A macronova is a clear signature that a short gamma-ray burst has been emitted by a compact-binary merger, but evidence of these events is so far scarce. Here, the authors report signs of a macronova in the optical afterglow of GRB050709, and find similar evidence in other three short bursts.
23 September 2016 | doi: 10.1038/ncomms12898

Molecular transport through large-diameter DNA nanopores OPEN
Swati Krishnan, Daniela Ziegler, Vera Arnaut, Thomas G. Martin, Korbinian Kapsner, Katharina Henneberg, Andreas R. Bausch, Hendrik Dietz and Friedrich C. Simmel
Artificial DNA membrane channels are promising molecular devices for biotechnology but suffer from low affinity for lipid bilayers. Here, the authors report a large DNA nanopore that spontaneously inserts into a flat lipid membrane, driven by engineered hydrophobic or streptavidin-biotin interactions.
23 September 2016 | doi: 10.1038/ncomms12787

Two-dimensional flow nanometry of biological nanoparticles for accurate determination of their size and emission intensity OPEN
Stephan Block, Björn Johansson Fast, Anders Lundgren, Vladimir P. Zhdanov and Fredrik Höök
Size and molecular composition of biological nanoparticles dictate their function, but cannot be simultaneously determined accurately. Here, Höök and others have subjected constrained biological nanoparticles on a lipid bilayer to hydrodynamic flow to quantify accurately both size and emission intensity.
23 September 2016 | doi: 10.1038/ncomms12956

GDF11 decreases bone mass by stimulating osteoclastogenesis and inhibiting osteoblast differentiation OPEN
Weiqing Liu, Liyan Zhou, Chenchen Zhou, Shiwen Zhang, Junjun Jing, Liang Xie, Ningyuan Sun, Xiaobo Duan, Wei Jing, Xing Liang, Hu Zhao, Ling Ye, Qianming Chen and Quan Yuan
GDF11 is related to myostatin yet has no known role in postnatal bone turnover. Here the authors show that recombinant GDF11 injection causes bone loss and impairs healing by driving osteoclastogenesis while inhibiting osteoblast differentiation, plus they show that anti-GDF11 Ab can inhibit bone loss in ovariectomy and ageing mouse models.
22 September 2016 | doi: 10.1038/ncomms12794

Sizing nanomaterials in bio-fluids by cFRAP enables protein aggregation measurements and diagnosis of bio-barrier permeability OPEN
Ranhua Xiong, Roosmarijn E. Vandenbroucke, Katleen Broos, Toon Brans, Elien Van Wonterghem, Claude Libert, Jo Demeester, Stefaan C. De Smedt and Kevin Braeckmans
Measuring the size distribution of nanomaterials in biological fluids is crucial to understand their properties in vivo. Here, the authors apply fluorescence recovery after photobleaching to measure protein aggregation in serum and to study permeability of biological membranes in mouse models.
22 September 2016 | doi: 10.1038/ncomms12982

Representational changes of latent strategies in rat medial prefrontal cortex precede changes in behaviour OPEN
Nathaniel James Powell and A. David Redish
The medial prefrontal cortex (mPFC) is involved in changing behavioural strategies. Recording neural ensembles in rats, Powell and Redish find that the requirement for those changes is represented in mPFC before they manifest behaviourally, both in tasks that externally force a change and in tasks with self-determined change.
22 September 2016 | doi: 10.1038/ncomms12830

Fragment-based discovery of a new family of non-peptidic small-molecule cyclophilin inhibitors with potent antiviral activities OPEN
Abdelhakim Ahmed-Belkacem, Lionel Colliandre, Nazim Ahnou, Quentin Nevers, Muriel Gelin, Yannick Bessin, Rozenn Brillet, Olivier Cala, Dominique Douguet, William Bourguet, Isabelle Krimm, Jean-Michel Pawlotsky and Jean- François Guichou
Cyclophilins play a key role in the life cycle of many viruses and represent important drug targets for broad-spectrum antiviral therapies. Here, the authors use fragment-based drug discovery to develop non-peptidic inhibitors of human cyclophilins with high activity against replication of a number of viral families.
22 September 2016 | doi: 10.1038/ncomms12777

Comparative genomics reveals adaptive evolution of Asian tapeworm in switching to a new intermediate host OPEN
Shuai Wang, Sen Wang, Yingfeng Luo, Lihua Xiao, Xuenong Luo, Shenghan Gao, Yongxi Dou, Huangkai Zhang, Aijiang Guo, Qingshu Meng, Junling Hou, Bing Zhang, Shaohua Zhang, Meng Yang, Xuelian Meng, Hailiang Mei, Hui Li, Zilong He, Xueliang Zhu, Xinyu Tan et al.
Only one of the three Taenia species causing taeniasis in humans was previously sequenced. Here the authors provide draft genomes of Taenia saginata and Taenia asiatica, analyse genome evolution of all three species, and identify potential targets for developing diagnostic markers or intervention tools.
22 September 2016 | doi: 10.1038/ncomms12845

Palmitoyl acyltransferase DHHC21 mediates endothelial dysfunction in systemic inflammatory response syndrome OPEN
Richard S. Beard, Xiaoyuan Yang, Jamie E. Meegan, Jonathan W. Overstreet, Clement G.Y. Yang, John A. Elliott, Jason J. Reynolds, Byeong J. Cha, Christopher D. Pivetti, David A. Mitchell, Mack H. Wu, Robert J. Deschenes and Sarah Y. Yuan
Breaking down the endothelial barrier is a hallmark of systemic inflammatory response syndrome. Here the authors show that palmitoylation, a post-translational modification of proteins, plays a critical role in altering endothelial function during inflammation, and suggest the targeting of palmitoyl acyltransferase DHHC21 as potential disease therapy.
22 September 2016 | doi: 10.1038/ncomms12823

A polyvalent inactivated rhinovirus vaccine is broadly immunogenic in rhesus macaques OPEN
Sujin Lee, Minh Trang Nguyen, Michael G. Currier, Joe B. Jenkins, Elizabeth A. Strobert, Adriana E. Kajon, Ranjna Madan-Lala, Yury A. Bochkov, James E. Gern, Krishnendu Roy, Xiaoyan Lu, Dean D. Erdman, Paul Spearman and Martin L. Moore
Existence of 150–170 serologically distinct human rhinoviruses (HRV) has hampered vaccine development for this human pathogen. Here, the authors show that a prime-boost regimen with an inactivated 50-valent HRV vaccine induces neutralizing antibody responses to diverse HRV serotypes in rhesus macaques.
22 September 2016 | doi: 10.1038/ncomms12838

H2A.Z controls the stability and mobility of nucleosomes to regulate expression of the LH genes OPEN
Sergei Rudnizky, Adaiah Bavly, Omri Malik, Lilach Pnueli, Philippa Melamed and Ariel Kaplan
Chromatin architecture at promoters can influence gene transcription. Here, the authors use a biophysical approach to elucidate how DNA sequence and histone variant usage modulate the properties of nucleosomes at the promoters of two target genes.
22 September 2016 | doi: 10.1038/ncomms12958

Unusual lattice vibration characteristics in whiskers of the pseudo-one-dimensional titanium trisulfide TiS3 OPEN
Kedi Wu, Engin Torun, Hasan Sahin, Bin Chen, Xi Fan, Anupum Pant, David Parsons Wright, Toshihiro Aoki, Francois M. Peeters, Emmanuel Soignard and Sefaattin Tongay
Transition metal trichalcogenides are layered materials with strong in-plane anisotropy, and their vibrational characteristics remain largely unexplored. Here, the authors present high-pressure Raman studies to uncover unusual vibrational effects within this specific class of materials.
22 September 2016 | doi: 10.1038/ncomms12952

Adaptive radiation by waves of gene transfer leads to fine-scale resource partitioning in marine microbes OPEN
Jan-Hendrik Hehemann, Philip Arevalo, Manoshi S. Datta, Xiaoqian Yu, Christopher H. Corzett, Andreas Henschel, Sarah P. Preheim, Sonia Timberlake, Eric J. Alm and Martin F. Polz
Adaptive radiations are well-known for animals and plants, but not for microbes. Here, Hehemann et al. show that there has been a recent adaptive radiation of bacteria in the Vibrionaceae to use different forms of alginate and that this radiation has been mediated by horizontal gene transfer.
22 September 2016 | doi: 10.1038/ncomms12860

Spin–orbit coupled molecular quantum magnetism realized in inorganic solid OPEN
Sang-Youn Park, S.-H. Do, K.-Y. Choi, J.-H. Kang, Dongjin Jang, B. Schmidt, Manuel Brando, B.-H. Kim, D.-H. Kim, N. P. Butch, Seongsu Lee, J.-H. Park and Sungdae Ji
Molecular magnets may provide fundamental building blocks for future spintronic and quantum information technologies. Here, the authors demonstrate how the Yb4 tetrahedral components of inorganic materials Ba3Yb2Zn5O11 behave as isolated molecular magnets.
21 September 2016 | doi: 10.1038/ncomms12912

The DNA cytosine deaminase APOBEC3H haplotype I likely contributes to breast and lung cancer mutagenesis OPEN
Gabriel J. Starrett, Elizabeth M. Luengas, Jennifer L. McCann, Diako Ebrahimi, Nuri A. Temiz, Robin P. Love, Yuqing Feng, Madison B. Adolph, Linda Chelico, Emily K. Law, Michael A. Carpenter and Reuben S Harris
The APOBEC family of enzymes are cytidine deaminases with APOBEC3A and APOBEC3B thought to contribute to DNA damage signatures detected in cancer genomes. Here, the authors demonstrate an unappreciated role for APOBEC3H haplotype I in the generation of DNA damage in breast cancer.
21 September 2016 | doi: 10.1038/ncomms12918

Selective targeting of IL-2 to NKG2D bearing cells for improved immunotherapy OPEN
Reza Ghasemi, Eric Lazear, Xiaoli Wang, Saeed Arefanian, Alexander Zheleznyak, Beatriz M. Carreno, Ryuji Higashikubo, Andrew E. Gelman, Daniel Kreisel, Daved H. Fremont and Alexander Sasha Krupnick
High-affinity IL-2Rα expressed by Tregs mitigates the potential of IL-2 use in cancer therapy. Here, the authors fuse IL-2 with an NKDG2 binding domain, and show that it induces IL-2 signalling selectively in NKG2D+ cells, delaying tumour growth in mice without the side effects of conventional IL-2 therapy.
21 September 2016 | doi: 10.1038/ncomms12878

Even–odd layer-dependent magnetotransport of high-mobility Q-valley electrons in transition metal disulfides OPEN
Zefei Wu, Shuigang Xu, Huanhuan Lu, Armin Khamoshi, Gui-Bin Liu, Tianyi Han, Yingying Wu, Jiangxiazi Lin, Gen Long, Yuheng He, Yuan Cai, Yugui Yao, Fan Zhang and Ning Wang
Few-layer transition metal dichalcogenides exhibit strong spin-valley entanglement and unconventional quantum Hall states, however their study has been limited by electron mobility. Here, the authors explore how quantum transport varies between even- and odd-layered systems of high mobility.
21 September 2016 | doi: 10.1038/ncomms12955

A conserved influenza A virus nucleoprotein code controls specific viral genome packaging OPEN
Étori Aguiar Moreira, Anna Weber, Hardin Bolte, Larissa Kolesnikova, Sebastian Giese, Seema Lakdawala, Martin Beer, Gert Zimmer, Adolfo García-Sastre, Martin Schwemmle and Mindaugas Juozapaitis
The nucleotide sequence of the eight genomic RNA segments of influenza A virus provides essential packaging signals, but how these sequences are recognized is unknown. Here, Moreira et al. identify conserved amino acids in the viral nucleoprotein that regulate packaging of RNA segments.
21 September 2016 | doi: 10.1038/ncomms12861

Dual regulation of cytoplasmic and mitochondrial acetyl-CoA utilization for improved isoprene production in Saccharomyces cerevisiae OPEN
Xiaomei Lv, Fan Wang, Pingping Zhou, Lidan Ye, Wenping Xie, Haoming Xu and Hongwei Yu
Microbial production of isoprene from renewable feedstock is a promising alternative to petroleum-based processes. Here, the authors show that isoprene production in the yeast Saccharomyces cerevisiae can be improved by dual metabolic engineering of cytoplasmic and mitochondrial acetyl-CoA utilization.
21 September 2016 | doi: 10.1038/ncomms12851

Weyl magnons in breathing pyrochlore antiferromagnets OPEN
Fei-Ye Li, Yao-Dong Li, Yong Baek Kim, Leon Balents, Yue Yu and Gang Chen
It was recently demonstrated that particular materials with non-trivial electronic band structure support quasiparticle excitations described by the relativistic Weyl equation. Here, the authors explore how an analogous magnonic band structure may exist in breathing pyrochlore antiferromagnets.
21 September 2016 | doi: 10.1038/ncomms12691

Palaeogeographic regulation of glacial events during the Cretaceous supergreenhouse OPEN
Jean-Baptiste Ladant and Yannick Donnadieu
Indirect evidence indicates the surprising occurrence of glacial events during the peak warmth of the Cretaceous world. Here, based on coupled climate-ice sheet model simulations, the authors show that such events were likely thwarted by palaeogeographic reorganisations and complex ocean-atmosphere feedbacks.
21 September 2016 | doi: 10.1038/ncomms12771

Male-killing symbiont damages host’s dosage-compensated sex chromosome to induce embryonic apoptosis OPEN
Toshiyuki Harumoto, Hisashi Anbutsu, Bruno Lemaitre and Takema Fukatsu
Symbiotic bacteria are able to interfere with host reproduction in ways that are detrimental to the host organism. Here the authors show that Spiroplasma induces DNA damage on the male X chromosome in Drosophila, causing sex-specific apoptosis.
21 September 2016 | doi: 10.1038/ncomms12781

Dephosphorylated parafibromin is a transcriptional coactivator of the Wnt/Hedgehog/Notch pathways OPEN
Ippei Kikuchi, Atsushi Takahashi-Kanemitsu, Natsuki Sakiyama, Chao Tang, Pei-Jung Tang, Saori Noda, Kazuki Nakao, Hidetoshi Kassai, Toshiro Sato, Atsu Aiba and Masanori Hatakeyama
Normal epithelial intestine organisation requires Wnt and Hedgehog signalling activity. Here, the authors show that parafibromin can activate both pathways in a mutually exclusive manner and is important for intestinal homeostasis.
21 September 2016 | doi: 10.1038/ncomms12887

Engineering surface atomic structure of single-crystal cobalt (II) oxide nanorods for superior electrocatalysis OPEN
Tao Ling, Dong-Yang Yan, Yan Jiao, Hui Wang, Yao Zheng, Xueli Zheng, Jing Mao, Xi-Wen Du, Zhenpeng Hu, Mietek Jaroniec and Shi-Zhang Qiao
Surface structure manipulation can manipulate the activity and durability of catalysts. Here, the authors report a series of one-dimensional single crystal cobalt oxide nanorods, and show that surface oxygen vacancy formation modifies electronic and adsorption properties leading to enhanced electrocatalysis.
21 September 2016 | doi: 10.1038/ncomms12876

Spatiotemporal dynamics of lesion-induced axonal sprouting and its relation to functional architecture of the cerebellum OPEN
Matasha Dhar, Joshua M. Brenner, Kenji Sakimura, Masanobu Kano and Hiroshi Nishiyama
Neurodegenerative lesions induce sprouting from surviving axons, but the patterns of re-innervation of these collaterals in relation to existing functional networks remains unclear. Here the authors performed long term in vivo imaging in mice, of sprouts from cerebellar climbing fibers after a lesion, and describe the patterns of connectivity relative to functionally active zones.
21 September 2016 | doi: 10.1038/ncomms12938
 
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