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| | | Specials - GM crops: Reality and promise | | | | The introduction of the first transgenic plant 30 years ago heralded the start of a second green revolution, providing food to the starving, profits to farmers and environmental benefits to boot. Many GM crops fulfilled the promise. But their success has been mired in controversy with many questioning their safety, their profitability and their green credentials. A polarized debate has left little room for consensus. In this special issue, Nature explores the hopes, the fears, the reality and the future. ▼ more | | | | | | | | | Globally networked risks and how to respond | Our modern world is made up of complex interdependent global networks that promote rapid exchange of people, goods, money, information and ideas. But, argues Dirk Helbing, those same networks could be our undoing. We cannot control them and the potential for catastrophic failure is programmed into the system at all scales. Helbing concludes that current methods of risk analysis are inadequate to today's needs. Yes we can fix it, but it will take global cooperation beyond anything so far achieved. | | | | | | | | | Using membrane transporters to improve crops for sustainable food production | Membrane transport proteins are key targets for improving the efficiency with which plants utilize water and nutrients. This Perspective article discusses work on specialized plant membrane transporters designed to enhance crop yields, increase nutritional value and boost resistance to stresses including pathogens. Promising developments include cereals that thrive in acid soil, salt-tolerant varieties and plants containing the micronutrients often lacking in plant-based diets in developing countries. | | | | | | | | | | | | | | | | Digital cameras with designs inspired by the arthropod eye | The eyes of insects provide intriguing models for camera designers to imitate. Here John Rogers and colleagues describe a new type of hemispherical camera that takes design cues from the eyes of fire ants and bark beetles. The new device is almost fully hemispherical and features 180 imaging elements, providing a 160-degree field of view. Potential applications include advanced surveillance cameras and miniaturized endoscopes. | | | | | | | | | | In this week's podcast: an insect-eye camera, a flu-busting drug that could treat other lung problems too, and a hard look at whether GM crops are harmful or helpful. | | | | | | |
| | | | | | | | | | | | | | Fields of gold ▶ | | | Research on transgenic crops must be done outside industry if it is to fulfil its early promise. | | | | | | | | | | | | | | | | | | | | | | | | | | Transgenics: A new breed ▶ | | | The next wave of genetically modified crops is making its way to market — and might just ease concerns over 'Frankenfoods'. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| | | | | | | | | | | | | | | | Plan for the future ▶ | | | The White House urgently needs to set out a clear plan for how it intends to monitor the state of Earth. | | | | | | | | Freed speech ▶ | | | The reform of English libel law is a victory, even if it doesn't achieve everything that was hoped. | | | | | | | | | | | | | | | | | Seven days: 26 April–2 May 2013 ▶ | | | The week in science: Bee-harming pesticides banned in Europe, North Korea atomic bomb detected, and chemist goes to trial over lab accident. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| | | | | | | | | | | | | | | | | | | | | | | | | Hierarchy of orofacial rhythms revealed through whisking and breathing ▶ | | | Jeffrey D. Moore, Martin Deschênes, Takahiro Furuta et al. | | | Motor patterns underlying the rodent exploratory behaviours whisking and sniffing are coordinated by respiratory centres in the ventral medulla; a distinct region in the ventral medulla provides rhythmic input to the facial motor neurons that drive scanning by the vibrissae, and input from the pre-Bötzinger complex coordinates whisking with sniffing and basal breathing. | | | | | | | | mTOR kinase structure, mechanism and regulation ▶ | | | Haijuan Yang, Derek G. Rudge, Joseph D. Koos et al. | | | Co-crystal structures of a number of complexes involving truncated mammalian target of rapamycin, a phosphoinositide 3-kinase-related protein kinase, reveal an intrinsically active kinase conformation and show how rapamycin–FKBP12 directly blocks substrate recruitment to the kinase domain. | | | | | | | | Hypothalamic programming of systemic ageing involving IKK-β, NF-κB and GnRH ▶ | | | Guo Zhang, Juxue Li, Sudarshana Purkayastha et al. | | | Activation of IKK-β and NF-κB in the hypothalamus of mice is shown to accelerate the ageing process, leading to shortened lifespan; inhibition of hypothalamic or brain IKK-β and NF-κB delays ageing and increases lifespan, and NF-κB activation results in a reduction of GnRH levels, whereas NF-κB inhibition leads to GnRH-induced neurogenesis to mediate ageing retardation. | | | | | | | | Structure of the human smoothened receptor bound to an antitumour agent ▶ | | | Chong Wang, Huixian Wu, Vsevolod Katritch et al. | | | The crystal structure of the human smoothened (SMO) receptor is presented in complex with a small-molecule antitumour agent; this represents the first example of a non-class-A, 7-transmembrane (7TM) receptor structure, revealing different conserved motifs common within class frizzled 7TM receptors and an unusually complex arrangement of long extracellular loops stabilized by disulphide bonds. | | | | | | | | | | | Thymus-derived regulatory T cells contribute to tolerance to commensal microbiota ▶ | | | Anna Cebula, Michal Seweryn, Grzegorz A. Rempala et al. | | | By using high-throughput sequencing of T-cell receptors, this study shows that thymus-derived regulatory T (Treg) cells constitute most Treg cells in all lymphoid and intestinal organs, including the colon, suggesting that thymic Treg cells and not induced Treg cells dominantly control tolerance to the gut's antigens such as commensal microbiota. | | | | | | | | | | | | | | The TLR4 antagonist Eritoran protects mice from lethal influenza infection ▶ | | | Kari Ann Shirey, Wendy Lai, Alison J. Scott et al. | | | TLR4 stimulation is known to contribute to acute lung injury after administration of inactivated influenza virus; here, the synthetic TLR4 antagonist Eritoran is shown to protect mice from death after infection with a lethal dose of the virus. | | | | | | | | Adaptive dynamics under development-based genotype–phenotype maps ▶ | | | Isaac Salazar-Ciudad, Miquel MarÃn-Riera | | | Tooth development is used as a model to examine which aspects of phenotype can be optimized by natural selection; this reveals that the complexity of the relationship between genotypic and phenotypic variation can affect adaptation | | | | | | | | Specialized filopodia direct long-range transport of SHH during vertebrate tissue patterning ▶ | | | Timothy A. Sanders, Esther Llagostera, Maria Barna | | | This study uses single-cell real-time imaging to show that sonic hedgehog (SHH) is produced in the form of a particle that is transported along a novel class of specialized actin-based filopodia spanning several cell diameters within the field of SHH cell signalling, thus expanding our knowledge of ligand movement during normal vertebrate development. | | | | | | | | Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1 ▶ | | | Julie A. Law, Jiamu Du, Christopher J. Hale et al. | | | In Arabidopsis, RNA-directed DNA methylation is a poorly understood gene silencing pathway in which small interfering RNAs generated by RNA polymerase IV (Pol-IV) target a DNA methyltransferase to its sites of action; here structural and genomic analyses demonstrate that SHH binds chromatin via repressive histone modifications and recruits Pol-IV to enable siRNA production. | | | | | | | | | | | Integrated genomic characterization of endometrial carcinoma OPEN ▶ | | | The Cancer Genome Atlas Research Network | | | An integrative genomic analysis of several hundred endometrial carcinomas shows that a minority of tumour samples carry copy number alterations or TP53 mutations and many contain key cancer-related gene mutations, such as those involved in canonical pathways and chromatin remodelling; a reclassification of endometrial tumours into four distinct types is proposed, which may have an effect on patient treatment regimes. | | | | | | | | Hippocampal place-cell sequences depict future paths to remembered goals ▶ | | | Brad E. Pfeiffer, David J. Foster | | | It is known that compressed sequences of hippocampal place cells can 'replay' previous navigational trajectories in linearly constrained mazes; here, rat place-cell sequences representing two-dimensional spatial trajectories were observed before navigational decisions, and predicted the immediate navigational path. | | | | | | | | Structures of the human and Drosophila 80S ribosome ▶ | | | Andreas M. Anger, Jean-Paul Armache, Otto Berninghausen et al. | | | High-resolution cryo-EM density maps are used to present the structures of Drosophila and human 80S ribosomes in complex with eEF2, E-site transfer RNA and Stm1-like proteins, and reveal the presence of two additional structural layers in the ribosomes of metazoan eukaryotes. | | | | | | | | Linking the evolution of body shape and locomotor biomechanics in bird-line archosaurs ▶ | | | Vivian Allen, Karl T. Bates, Zhiheng Li et al. | | | Estimations of body shape and three-dimensional digital reconstructions of representative archosaurs along the ancestral bird line support hypotheses of a gradual, stepwise acquisition of more-crouched limb postures across much of theropod evolution but indicate that an accelerated change, rather than a discrete transition from more-upright postures, occurred within the clade Maniraptora (birds and their closest relatives, such as deinonychosaurs). | | | | | | | | | | | Random convergence of olfactory inputs in the Drosophila mushroom body ▶ | | | Sophie J. C. Caron, Vanessa Ruta, L. F. Abbott et al. | | | In Drosophila, olfactory sensory neurons project to spatially invariant loci (glomeruli) and stereotyped circuitry is maintained in projections to a brain centre thought to mediate innate behaviours; here it is shown that neurons of the mushroom body, a centre that translates olfactory information into learned behaviours, integrate input from an apparently random combination of glomeruli, which could allow the fly to contextualize novel sensory experiences. | | | | | | | | Tension sensing by Aurora B kinase is independent of survivin-based centromere localization ▶ | | | Christopher S. Campbell, Arshad Desai | | | The current model to explain accurate chromosome segregation after DNA replication holds that kinetochore–microtubule attachments exert tension across the centromere and are stabilized by spatial separation from inner centromere-localized Aurora B; here an alternative model is presented, wherein active Aurora B produced by clustering is sufficient to ensure biorientation through a mechanism that is intrinsic to the kinetochore. | | | | | | | | | | | Extensive transcriptional heterogeneity revealed by isoform profiling ▶ | | | Vicent Pelechano, Wu Wei, Lars M. Steinmetz | | | Variation among RNA transcript isoforms can be generated from alternative start and polyadenylation sites, and results in RNAs and proteins with different properties being generated from the same genomic sequence; here a new method termed transcript isoform sequencing is described in yeast, and the method allows a fuller exploration of transcriptome diversity across the compact yeast genome. | | | | | | | | | | | Structure of active β-arrestin-1 bound to a G-protein-coupled receptor phosphopeptide ▶ | | | Arun K. Shukla, Aashish Manglik, Andrew C. Kruse et al. | | | The crystal structure of β-arrestin-1 in complex with a fully phosphorylated 29-amino-acid carboxy-terminal peptide derived from the V2 vasopressin receptor is reported; the structure of the complex shows striking conformational differences in β-arrestin-1 when compared with its inactive conformation. | | | | | | | | Crystal structure of pre-activated arrestin p44 ▶ | | | Yong Ju Kim, Klaus Peter Hofmann, Oliver P. Ernst et al. | | | The crystal structure of arrestin-1 is reported, in which the activation step is mimicked by C-tail truncation; the structure of this pre-activated arrestin is markedly different from the basal state and gives an insight into the activation mechanism. | | | | | | | | | | | Globally networked risks and how to respond ▶ | | | Dirk Helbing | | | Strongly connected and interdependent networks create risks of global-scale catastrophic failure; to make networked risks more manageable, it is suggested to establish a 'Global Systems Science'. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
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| | | | | | | | | | | | | | | | | | | mTOR kinase structure, mechanism and regulation ▶ | | | Haijuan Yang, Derek G. Rudge, Joseph D. Koos, Bhamini Vaidialingam, Hyo J. Yang et al. | | | Co-crystal structures of a number of complexes involving truncated mammalian target of rapamycin, a phosphoinositide 3-kinase-related protein kinase, reveal an intrinsically active kinase conformation and show how rapamycin–FKBP12 directly blocks substrate recruitment to the kinase domain. | | | | | | | | Structure of the human smoothened receptor bound to an antitumour agent ▶ | | | Chong Wang, Huixian Wu, Vsevolod Katritch, Gye Won Han, Xi-Ping Huang et al. | | | The crystal structure of the human smoothened (SMO) receptor is presented in complex with a small-molecule antitumour agent; this represents the first example of a non-class-A, 7-transmembrane (7TM) receptor structure, revealing different conserved motifs common within class frizzled 7TM receptors and an unusually complex arrangement of long extracellular loops stabilized by disulphide bonds. | | | | | | | | Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1 ▶ | | | Julie A. Law, Jiamu Du, Christopher J. Hale, Suhua Feng, Krzysztof Krajewski et al. | | | In Arabidopsis, RNA-directed DNA methylation is a poorly understood gene silencing pathway in which small interfering RNAs generated by RNA polymerase IV (Pol-IV) target a DNA methyltransferase to its sites of action; here structural and genomic analyses demonstrate that SHH binds chromatin via repressive histone modifications and recruits Pol-IV to enable siRNA production. | | | | | | | | | | | Structures of the human and Drosophila 80S ribosome ▶ | | | Andreas M. Anger, Jean-Paul Armache, Otto Berninghausen, Michael Habeck, Marion Subklewe et al. | | | High-resolution cryo-EM density maps are used to present the structures of Drosophila and human 80S ribosomes in complex with eEF2, E-site transfer RNA and Stm1-like proteins, and reveal the presence of two additional structural layers in the ribosomes of metazoan eukaryotes. | | | | | | | | The catalytic mechanism for aerobic formation of methane by bacteria ▶ | | | Siddhesh S. Kamat, Howard J. Williams, Lawrence J. Dangott, Mrinmoy Chakrabarti & Frank M. Raushel | | | A mechanism is proposed for the formation of methane by bacteria, through the cleavage of a highly unreactive carbon–phosphorus bond in methyl phosphonate by PhnJ in the bacterial C–P lyase complex. | | | | | | | | Structure of active β-arrestin-1 bound to a G-protein-coupled receptor phosphopeptide ▶ | | | Arun K. Shukla, Aashish Manglik, Andrew C. Kruse, Kunhong Xiao, Rosana I. Reis et al. | | | The crystal structure of β-arrestin-1 in complex with a fully phosphorylated 29-amino-acid carboxy-terminal peptide derived from the V2 vasopressin receptor is reported; the structure of the complex shows striking conformational differences in β-arrestin-1 when compared with its inactive conformation. | | | | | | | | Crystal structure of pre-activated arrestin p44 ▶ | | | Yong Ju Kim, Klaus Peter Hofmann, Oliver P. Ernst, Patrick Scheerer, Hui-Woog Choe et al. | | | The crystal structure of arrestin-1 is reported, in which the activation step is mimicked by C-tail truncation; the structure of this pre-activated arrestin is markedly different from the basal state and gives an insight into the activation mechanism. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Formation of a topological non-Fermi liquid in MnSi ▶ | | | R. Ritz, M. Halder, M. Wagner et al. | | | The non-Fermi-liquid regime that emerges in MnSi under high pressures displays a Hall signal that can be traced to topologically non-trivial spin configurations at low pressures — a well-understood skyrmion lattice — empirically suggesting a route towards a breakdown of Fermi liquid theory in pure metals. | | | | | | | | | | | Heralded entanglement between solid-state qubits separated by three metres ▶ | | | H. Bernien, B. Hensen, W. Pfaff et al. | | | Entanglement of two electron spin qubits in diamond with a spatial separation of three metres is reported; such entanglement can be combined with recently achieved initialization, readout and entanglement operations on local long-lived nuclear spin registers, and paves the way for deterministic long-distance teleportation, quantum repeaters and extended quantum networks. | | | | | | | | Optical addressing of an individual erbium ion in silicon ▶ | | | Chunming Yin, Milos Rancic, Gabriele G. de Boo et al. | | | A hybrid approach to detecting individual defect spins in solids, whereby an optically induced spin change is detected electronically, offers the high fidelities required for quantum information processing devices. | | | | | | | | Digital cameras with designs inspired by the arthropod eye ▶ | | | Young Min Song, Yizhu Xie, Viktor Malyarchuk et al. | | | Digital cameras with layouts inspired by the compound, hemispherical designs of arthropod eyes have been built by combining elastomeric optical elements with deformable arrays of thin silicon photodetectors. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Long-term sedimentary recycling of rare sulphur isotope anomalies ▶ | | | Christopher T. Reinhard, Noah J. Planavsky, Timothy W. Lyons | | | The disappearance of non-mass-dependent sulphur isotope anomalies from the rock record is thought to indicate the increase in atmospheric oxygen concentration from its initial, persistently low level; however, as a result of long-term surface recycling these anomalies may in fact survive in the sedimentary record for as long as 100 million years after an increase in atmospheric oxygen. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | For many years, science in the Asia-Pacific region has been dominated by Japan. However, as seen through the lens of the Nature Publishing Index (NPI), the fastest growth in high-quality research is now coming from other countries- in particular China and Singapore. The 2012 NPI Asia-Pacific presents an analysis of the dynamic changes in the region’s scientific publishing record. www.natureasia.com/en/publishing-index/asia-pacific/ | | | | | | | | |
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