The ISME Journal - Table of Contents alert Volume 8 Issue 7

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TABLE OF CONTENTS Volume 8, Issue 7 (July 2014) In this issue Commentary Original Articles Short Communication Corrigenda Also new AOP Sign up for e-alerts Recommend to your library Web feed Subscribe Commentary Top ‘Geoarchaeote NAG1’ is a deeply rooting lineage of the archaeal order Thermoproteales rather than a new phylum Lionel Guy, Anja Spang, Jimmy H Saw and Thijs J G Ettema ISME J 2014 8: 1353-1357; advance online publication, February 13, 2014; 10.1038/ismej.2014.6 Full Text Original Articles Top MICROBIAL POPULATION AND COMMUNITY ECOLOGY The quest for a unified view of bacterial land colonization OPEN Hao Wu, Yongjun Fang, Jun Yu and Zhang Zhang ISME J 2014 8: 1358-1369; advance online publication, January 23, 2014; 10.1038/ismej.2013.247 Abstract | Full Text Microorganisms persist at record depths in the subseafloor of the Canterbury Basin Maria-Cristina Ciobanu, Gaëtan Burgaud, Alexis Dufresne, Anja Breuker, Vanessa Rédou, Sarah Ben Maamar, Frédéric Gaboyer, Odile Vandenabeele-Trambouze, Julius Sebastian Lipp, Axel Schippers, Philippe Vandenkoornhuyse, Georges Barbier, Mohamed Jebbar, Anne Godfroy and Karine Alain ISME J 2014 8: 1370-1380; advance online publication, January 16, 2014; 10.1038/ismej.2013.250 Abstract | Full Text Wastewater as a point source of antibiotic-resistance genes in the sediment of a freshwater lake Nadine Czekalski, Elena Gascón Díez and Helmut Bürgmann ISME J 2014 8: 1381-1390; advance online publication, March 6, 2014; 10.1038/ismej.2014.8 Abstract | Full Text Classification and quantification of bacteriophage taxa in human gut metagenomes Alison S Waller, Takuji Yamada, David M Kristensen, Jens Roat Kultima, Shinichi Sunagawa, Eugene V Koonin and Peer Bork ISME J 2014 8: 1391-1402; advance online publication, March 13, 2014; 10.1038/ismej.2014.30 Abstract | Full Text MICROBE-MICROBE AND MICROBE-HOST INTERACTIONS Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission OPEN Michelle G Rooks, Patrick Veiga, Leslie H Wardwell-Scott, Timothy Tickle, Nicola Segata, Monia Michaud, Carey Ann Gallini, Chloé Beal, Johan ET van Hylckama-Vlieg, Sonia A Ballal, Xochitl C Morgan, Jonathan N Glickman, Dirk Gevers, Curtis Huttenhower and Wendy S Garrett ISME J 2014 8: 1403-1417; advance online publication, February 6, 2014; 10.1038/ismej.2014.3 Abstract | Full Text Direct exchange of vitamin B12 is demonstrated by modelling the growth dynamics of algal–bacterial cocultures Matthew AA Grant, Elena Kazamia, Pietro Cicuta and Alison G Smith ISME J 2014 8: 1418-1427; advance online publication, February 13, 2014; 10.1038/ismej.2014.9 Abstract | Full Text EVOLUTIONARY GENETICS Evolutionary analysis of a streamlined lineage of surface ocean Roseobacters Haiwei Luo, Brandon K Swan, Ramunas Stepanauskas, Austin L Hughes and Mary Ann Moran ISME J 2014 8: 1428-1439; advance online publication, January 23, 2014; 10.1038/ismej.2013.248 Abstract | Full Text INTEGRATED GENOMICS AND POST-GENOMICS APPROACHES IN MICROBIAL ECOLOGY Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype J Cameron Thrash, Ben Temperton, Brandon K Swan, Zachary C Landry, Tanja Woyke, Edward F DeLong, Ramunas Stepanauskas and Stephan J Giovannoni ISME J 2014 8: 1440-1451; advance online publication, January 23, 2014; 10.1038/ismej.2013.243 Abstract | Full Text Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer Kelly C Wrighton, Cindy J Castelle, Michael J Wilkins, Laura A Hug, Itai Sharon, Brian C Thomas, Kim M Handley, Sean W Mullin, Carrie D Nicora, Andrea Singh, Mary S Lipton, Philip E Long, Kenneth H Williams and Jillian F Banfield ISME J 2014 8: 1452-1463; advance online publication, March 13, 2014; 10.1038/ismej.2013.249 Abstract | Full Text Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill OPEN Olivia U Mason, Nicole M Scott, Antonio Gonzalez, Adam Robbins-Pianka, Jacob Bælum, Jeffrey Kimbrel, Nicholas J Bouskill, Emmanuel Prestat, Sharon Borglin, Dominique C Joyner, Julian L Fortney, Diogo Jurelevicius, William T Stringfellow, Lisa Alvarez-Cohen, Terry C Hazen, Rob Knight, Jack A Gilbert and Janet K Jansson ISME J 2014 8: 1464-1475; advance online publication, January 23, 2014; 10.1038/ismej.2013.254 Abstract | Full Text A microarray for assessing transcription from pelagic marine microbial taxa Irina N Shilova, Julie C Robidart, H James Tripp, Kendra Turk-Kubo, Boris Wawrik, Anton F Post, Anne W Thompson, Bess Ward, James T Hollibaugh, Andy Millard, Martin Ostrowski, David J Scanlan, Ryan W Paerl, Rhona Stuart and Jonathan P Zehr ISME J 2014 8: 1476-1491; advance online publication, January 30, 2014; 10.1038/ismej.2014.1 Abstract | Full Text Functional characterization of polysaccharide utilization loci in the marine Bacteroidetes ‘Gramella forsetii’ KT0803 OPEN Antje Kabisch, Andreas Otto, Sten König, Dörte Becher, Dirk Albrecht, Margarete Schüler, Hanno Teeling, Rudolf I Amann and Thomas Schweder ISME J 2014 8: 1492-1502; advance online publication, February 13, 2014; 10.1038/ismej.2014.4 Abstract | Full Text GEOMICROBIOLOGY AND MICROBIAL CONTRIBUTIONS TO GEOCHEMICAL CYCLES High virus-to-cell ratios indicate ongoing production of viruses in deep subsurface sediments Tim Engelhardt, Jens Kallmeyer, Heribert Cypionka and Bert Engelen ISME J 2014 8: 1503-1509; advance online publication, January 16, 2014; 10.1038/ismej.2013.245 Abstract | Full Text MICROBIAL ECOLOGY AND FUNCTIONAL DIVERSITY OF NATURAL HABITATS Deep-sea hydrothermal vent Epsilonproteobacteria encode a conserved and widespread nitrate reduction pathway (Nap) Costantino Vetriani, James W Voordeckers, Melitza Crespo-Medina, Charles E O'Brien, Donato Giovannelli and Richard A Lutz ISME J 2014 8: 1510-1521; advance online publication, January 16, 2014; 10.1038/ismej.2013.246 Abstract | Full Text Genomic analysis of Chthonomonas calidirosea, the first sequenced isolate of the phylum Armatimonadetes Kevin C-Y Lee, Xochitl C Morgan, Peter F Dunfield, Ivica Tamas, Ian R McDonald and Matthew B Stott ISME J 2014 8: 1522-1533; advance online publication, January 30, 2014; 10.1038/ismej.2013.251 Abstract | Full Text Crenarchaeal heterotrophy in salt marsh sediments Lauren M Seyler, Lora M McGuinness and Lee J Kerkhof ISME J 2014 8: 1534-1543; advance online publication, February 20, 2014; 10.1038/ismej.2014.15 Abstract | Full Text Short Communication Top MICROBIAL POPULATION AND COMMUNITY ECOLOGY Lateral transfer of eukaryotic ribosomal RNA genes: an emerging concern for molecular ecology of microbial eukaryotes OPEN Akinori Yabuki, Takashi Toyofuku and Kiyotaka Takishita ISME J 2014 8: 1544-1547; advance online publication, January 23, 2014; 10.1038/ismej.2013.252 Abstract | Full Text Links between plant and fungal communities across a deforestation chronosequence in the Amazon rainforest Rebecca C Mueller, Fabiana S Paula, Babur S Mirza, Jorge LM Rodrigues, Klaus Nüsslein and Brendan JM Bohannan ISME J 2014 8: 1548-1550; advance online publication, January 23, 2014; 10.1038/ismej.2013.253 Abstract | Full Text Corrigenda Top Links between plant and fungal communities across a deforestation chronosequence in the Amazon rainforest Rebecca C Mueller, Fabiana S Paula, Babur S Mirza, Jorge L M Rodrigues, Klaus Nüsslein and Brendan J M Bohannan ISME J 2014 8: 1551; 10.1038/ismej.2014.62 Full Text Classification and quantification of bacteriophage taxa in human gut metagenomes Alison S Waller, Takuji Yamada, David M Kristensen, Jens Roat Kultima, Shinichi Sunagawa, Eugene V Koonin and Peer Bork ISME J 2014 8: 1551-1552; 10.1038/ismej.2014.66 Full Text Natureevents is a fully searchable, multi-disciplinary database designed to maximise exposure for events organisers. 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