| | Volume 509 Number 7500 | | | nature | | The science that matters. Every week. | | | | | | | | | | APPLY TODAY for the 2014 ONCOLOGY RESEARCH GRANT. Together with Illumina, we're giving two deserving researchers the power to tap into the wealth of genomic data locked within FFPE samples using an innovative technique developed by EA | Quintiles using Illumina's RNA Access method. Unleash the power of your research with RNA-seq and DNA Methylation. expressionanalysis.com/grant | | | | | | | Jump to the content that matters to you | | | | | | | | | | Cepheid variables in the flared outer disk of our Galaxy | We are in the dark about the structure of much our own Galaxy because the stellar disk is largely hidden by the densely packed stars in the spherical Galactic bulge. But now the discovery of large numbers of Cepheid variable candidates – the 'standard candles' of astronomy – has provided an opportunity to probe the far side of our Galaxy. Patricia Whitelock and colleagues use five conveniently placed Cepheids as distance indicators and find that they are associated with a thickening or 'flaring' of the outer disk that has previously been inferred from observations of atomic hydrogen. | | | | | | | | | The poleward migration of the location of tropical cyclone maximum intensity | Attempts to monitor changes in tropical cyclone activity have been hampered by inconsistencies in global datasets. A new study by-passes this problem by instead focusing on the latitude at which tropical cyclones reached their lifetime maximum intensity. The authors find that during the past 30 years the zone of peak intensity has migrated steadily towards the poles, at a rate of about 60 km per decade. The shift seems to be associated with changes in vertical wind shear and potential intensity that may be associated with tropical expansion. | | | | | | | | | A semi-synthetic organism with an expanded genetic alphabet | The genetic code is simple: four bases that form two pairs (A–T and G–C) are used in all of life. Expansion of this code to incorporate unnatural nucleotides and base pairs has been a goal of synthetic biology, as it would open up ways to tailor organisms for directed purposes. Floyd Romesberg and colleagues now demonstrate that two hydrophobic nucleotides, d5SICSTP and dNaMTP, can be added to the medium in which Escherichia coli expressing an algal nucleotide triphosphate transporter is growing, and these nucleotides are successfully incorporated in the genome without cell growth being significantly impacted. | | | | | | | | | | | | | | In this week's podcast: baby-killing mice become caring dads at the flick of a genetic switch, how using male cells and animals could bias results, and how a loss of water in California's Central Valley may be moving mountains. In our latest video feature, scientists have found the oldest sperm ever discovered, and they are whoppers. | | | | | | | | | | | | | | | | | | | | | | | | An accident waiting to happen ▶ | | | The release of radioactive material at a US nuclear-waste repository reveals an all-too-common picture of complacency over safety and a gradual downgrading of regulations. | | | | | | | | Full support ▶ | | | Germany should follow the United Kingdom’s lead and spell out the benefits of animal research. | | | | | | | | Hard data ▶ | | | It has been no small feat for the Protein Data Bank to stay relevant for 100,000 structures. | | | | | | | | | | | Is it right to reverse extinction? ▶ | | | Several groups are working to bring back long-dead species, but these efforts could undo some hard-learned lessons, argues Ben Minteer. | | | | | | | | | | | Seven days 9–15 May 2014 ▶ | | | The week in science: UK pledge to be more open about animal research; Stanford University axes coal-company investments; and Vermont passes GM-labelling law. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Cosmology: First light ▶ | | | The left-over radiation from the Big Bang has given up what may be its last great secret about the early Universe, but astronomers are determined to mine more from this primordial prize. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Join the most influential at EuroScience Open Forum (ESOF) 2014 Copenhagen - June 21-26, 2014. Officially opening by HM Queen Margrethe II of Denmark and President José Manuel Barroso, European Commission. ESOF2014 makes the voice of researchers audible to society at large. Early bird offer! Get one year Nature subscription for free - sign up before May 31 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Amygdala interneuron subtypes control fear learning through disinhibition ▶ | | | Steffen B. E. Wolff, Jan Gründemann, Philip Tovote et al. | | | Plasticity within neuronal microcircuits is believed to be the substrate of learning, and this study identifies two distinct disinhibitory mechanisms involving interactions between PV+ and SOM+ interneurons that dynamically regulate principal neuron activity in the amygdala and thereby control auditory fear learning. | | | | | | | | | | | Cell competition is a tumour suppressor mechanism in the thymus ▶ | | | Vera C. Martins, Katrin Busch, Dilafruz Juraeva et al. | | | T cells develop from thymic precursor cells that are constantly replaced with newly arriving bone marrow progenitor cells, and the ‘old’ and ‘new’ cells are shown here to compete; in the absence of cell competition, when the influx of new bone marrow progenitor cells is blocked, the old cells acquire the ability to self-renew and eventually become transformed, leading to the development of a form of leukaemia. | | | | | | | | Mfsd2a is a transporter for the essential omega-3 fatty acid docosahexaenoic acid ▶ | | | Long N. Nguyen, Dongliang Ma, Guanghou Shui et al. | | | Mfsd2a is the major transporter of the omega-3 fatty acid docosahexaenoic acid (DHA) into brain, with Mfsd2a-knockout mice showing reduced DHA in brain, neuronal cell loss in hippocampus and cerebellum, behavioural disorders and reduced brain size; DHA is transported in a sodium-dependent manner, in the form of lysophosphatidylcholines (LPCs) carrying long-chain fatty acids. | | | | | | | | | | | CFIm25 links alternative polyadenylation to glioblastoma tumour suppression ▶ | | | Chioniso P. Masamha, Zheng Xia, Jingxuan Yang et al. | | | CFIm25 is identified as a factor that prevents messenger RNAs being shortened due to altered 3′ polyadenylation, which typically occurs when cells undergo high proliferation and correlates with increased tumorigenic activity in glioblastoma tumours. | | | | | | | | Ribosomal oxygenases are structurally conserved from prokaryotes to humans ▶ | | | Rasheduzzaman Chowdhury, Rok Sekirnik, Nigel C. Brissett et al. | | | Crystal structures of human and prokaryotic ribosomal oxygenases reported here, with and without their ribosomal protein substrates, support their assignments as hydroxylases, and provide insights into the evolution of the JmjC-domain-containing hydroxylases and demethylases. | | | | | | | | | | | Purkinje-cell plasticity and cerebellar motor learning are graded by complex-spike duration ▶ | | | Yan Yang, Stephen G. Lisberger | | | Recordings from monkeys during motor learning suggest that durations of complex-spike (CS) responses to climbing-fibre inputs are meaningful signals correlated across the Purkinje-cell population during motor learning; longer climbing-fibre bursts lead to longer-duration CS responses, larger synaptic depression and stronger learning, thus forming a graded instruction. | | | | | | | | A single female-specific piRNA is the primary determiner of sex in the silkworm ▶ | | | Takashi Kiuchi, Hikaru Koga, Munetaka Kawamoto et al. | | | It is known that in the silkworm (Bombyx mori), males have two Z sex chromosomes whereas females have Z and W and the W chromosome has a dominant role in female determination; here a single female-specific W-chromosome-derived PIWI-interacting RNA is shown to be the feminizing factor in B. mori. | | | | | | | | Mfsd2a is critical for the formation and function of the blood–brain barrier ▶ | | | Ayal Ben-Zvi, Baptiste Lacoste, Esther Kur et al. | | | Mfsd2a is a key regulator of blood–brain barrier (BBB) formation and function in mice: Mfsd2a is selectively expressed in BBB-containing blood vessels in the CNS; Mfsd2a−/− mice have a leaky BBB and increased vesicular transcytosis in CNS endothelial cells; and Mfsd2a endothelial expression is regulated by pericytes to facilitate BBB integrity. | | | | | | | | | | | | | | Galanin neurons in the medial preoptic area govern parental behaviour ▶ | | | Zheng Wu, Anita E. Autry, Joseph F. Bergan et al. | | | Sexual experience brings radical changes in how male mice behave with pups—virgin males attack them whereas mature fathers display parental care; here the authors identify a subset of hypothalamic neurons whose ablation leads to parental deficits in both males and females, and whose activation in virgin males suppresses aggression and induces pup grooming. | | | | | | | | Space–time wiring specificity supports direction selectivity in the retina ▶ | | | Jinseop S. Kim, Matthew J. Greene, Aleksandar Zlateski et al. | | | Motion detection by the retina is thought to rely largely on the biophysics of starburst amacrine cell dendrites; here machine learning is used with gamified crowdsourcing to draw the wiring diagram involving amacrine and bipolar cells to identify a plausible circuit mechanism for direction selectivity; the model suggests similarities between mammalian and insect vision. | | | | | | | | c-kit+ cells minimally contribute cardiomyocytes to the heart ▶ | | | Jop H. van Berlo, Onur Kanisicak, Marjorie Maillet et al. | | | Whether or not endogenous c-kit+ cells residing within the heart contribute cardiomyocytes during physiological ageing or after injury remains unknown; here, using an inducible lineage tracing system, the c-kit+ lineage is shown to generate cardiomyocytes at very low levels, and, by contrast, contributes substantially to cardiac endothelial cell generation. | | | | | | | | Anthropogenic electromagnetic noise disrupts magnetic compass orientation in a migratory bird ▶ | | | Svenja Engels, Nils-Lasse Schneider, Nele Lefeldt et al. | | | For the first time under reproducible and fully double-blinded conditions, it is shown that anthropogenic electromagnetic noise below the WHO limits affects a biological system: night-migrating birds lose the ability to use the Earth’s magnetic field for orientation when exposed to anthropogenic electromagnetic noise at strengths routinely produced by commonly used electronic devices. | | | | | | | | Dynamics and associations of microbial community types across the human body ▶ | | | Tao Ding, Patrick D. Schloss | | | The microbiome composition of 300 individuals sampled over 12–18 months was partitioned into microbial community types, which could be associated with the type found at other body sites, as well as with whether individuals were breastfed as an infant, their gender and their level of education. | | | | | | | | T-cell activation by transitory neo-antigens derived from distinct microbial pathways ▶ | | | Alexandra J. Corbett, Sidonia B. G. Eckle, Richard W. Birkinshaw et al. | | | Activation of mucosal-associated invariant T (MAIT) cells is shown to require key genes encoding an early intermediate in bacterial riboflavin synthesis, 5-amino-6-d-ribitylaminouracil; this reacts non-enzymatically with metabolites to form short-lived antigens that are captured and stabilized by MR1 for presentation to MAIT cells. | | | | | | | | | | | | | | Disruption of Mediator rescues the stunted growth of a lignin-deficient Arabidopsis mutant ▶ | | | Nicholas D. Bonawitz, Jeong Im Kim, Yuki Tobimatsu et al. | | | Disruption of lignin biosynthesis has been proposed as a way to improve forage and bioenergy crops, but it can result in stunted growth and developmental abnormalities; here, the undesirable features of one such manipulation are shown to depend on the transcriptional co-regulatory complex Mediator. | | | | | | | | | | | A semi-synthetic organism with an expanded genetic alphabet ▶ | | | Denis A. Malyshev, Kirandeep Dhami, Thomas Lavergne et al. | | | Triphosphates of hydrophobic nucleotides d5SICS and dNaM are imported into Escherichia coli by an exogenous algal nucleotide triphosphate transporter and then used by an endogenous polymerase to replicate, and faithfully maintain over many generations of growth, a plasmid containing the d5SICS–dNaM unnatural base pair. | | | | | | | | | | | Nucleotide signalling during inflammation ▶ | | | Marco Idzko, Davide Ferrari, Holger K. Eltzschig | | | Extracellular ATP released from cells during inflammatory responses predominantly functions as a signalling molecule through the activation of purinergic P2 receptors and contributes to both beneficial and detrimental inflammatory responses; this review examines P2 receptor signalling via ATP and its effect on the outcome of inflammatory and infectious diseases. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | An open access online-only multidisciplinary journal publishing high-quality research in all areas of primary care management of respiratory and respiratory-related allergic diseases. This title is part of the Nature Partner Journals portfolio - a new series of online open access journals published in collaboration with world-renowned international partners. | | | | | | | | | | | | | | | | | | | | | | | | | Cell competition is a tumour suppressor mechanism in the thymus ▶ | | | Vera C. Martins, Katrin Busch, Dilafruz Juraeva et al. | | | T cells develop from thymic precursor cells that are constantly replaced with newly arriving bone marrow progenitor cells, and the ‘old’ and ‘new’ cells are shown here to compete; in the absence of cell competition, when the influx of new bone marrow progenitor cells is blocked, the old cells acquire the ability to self-renew and eventually become transformed, leading to the development of a form of leukaemia. | | | | | | | | CFIm25 links alternative polyadenylation to glioblastoma tumour suppression ▶ | | | Chioniso P. Masamha, Zheng Xia, Jingxuan Yang et al. | | | CFIm25 is identified as a factor that prevents messenger RNAs being shortened due to altered 3′ polyadenylation, which typically occurs when cells undergo high proliferation and correlates with increased tumorigenic activity in glioblastoma tumours. | | | | | | | | | | | Anthropogenic electromagnetic noise disrupts magnetic compass orientation in a migratory bird ▶ | | | Svenja Engels, Nils-Lasse Schneider, Nele Lefeldt et al. | | | For the first time under reproducible and fully double-blinded conditions, it is shown that anthropogenic electromagnetic noise below the WHO limits affects a biological system: night-migrating birds lose the ability to use the Earth’s magnetic field for orientation when exposed to anthropogenic electromagnetic noise at strengths routinely produced by commonly used electronic devices. | | | | | | | | | | | Nucleotide signalling during inflammation ▶ | | | Marco Idzko, Davide Ferrari, Holger K. Eltzschig | | | Extracellular ATP released from cells during inflammatory responses predominantly functions as a signalling molecule through the activation of purinergic P2 receptors and contributes to both beneficial and detrimental inflammatory responses; this review examines P2 receptor signalling via ATP and its effect on the outcome of inflammatory and infectious diseases. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Total synthesis and isolation of citrinalin and cyclopiamine congeners ▶ | | | Eduardo V. Mercado-Marin, Pablo Garcia-Reynaga, Stelamar Romminger et al. | | | Natural products citrinalin B and cyclopiamine B, which contain basic nitrogen atoms that are susceptible to oxidation during synthesis, can be synthesized by the selective introduction and removal of functional groups. | | | | | | | | Cepheid variables in the flared outer disk of our galaxy ▶ | | | Michael W. Feast, John W. Menzies, Noriyuki Matsunaga et al. | | | Five classical Cepheids have been detected in the outer parts of our Galaxy beyond the Galactic bulge; they are probably associated with the gas in the flared disk and, if so, they are the first stars to be identified in the flare. | | | | | | | | Tracking excited-state charge and spin dynamics in iron coordination complexes ▶ | | | Wenkai Zhang, Roberto Alonso-Mori, Uwe Bergmann et al. | | | Femtosecond resolution X-ray fluorescence spectroscopy is shown to track the charge and spin dynamics triggered when an iron coordination complex is excited by light, and establishes the critical role of intermediate spin states in the de-excitation process. | | | | | | | | Anthropogenic electromagnetic noise disrupts magnetic compass orientation in a migratory bird ▶ | | | Svenja Engels, Nils-Lasse Schneider, Nele Lefeldt et al. | | | For the first time under reproducible and fully double-blinded conditions, it is shown that anthropogenic electromagnetic noise below the WHO limits affects a biological system: night-migrating birds lose the ability to use the Earth’s magnetic field for orientation when exposed to anthropogenic electromagnetic noise at strengths routinely produced by commonly used electronic devices. | | | | | | | | | | | Recent advances in homogeneous nickel catalysis ▶ | | | Sarah Z. Tasker, Eric A. Standley, Timothy F. Jamison | | | Some of the most recent and significant developments in homogeneous nickel catalysis are reviewed, including nickel-mediated cross-coupling reactions and carbon–hydrogen bond activation reactions. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | The poleward migration of the location of tropical cyclone maximum intensity ▶ | | | James P. Kossin, Kerry A. Emanuel, Gabriel A. Vecchi | | | Analysis of global historical data in the Northern and Southern hemispheres reveals a statistically significant, poleward migration of 1° per decade in the average latitude at which tropical cyclones have achieved their lifetime-maximum intensity over the past 30 years. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Nature, Nature Biotechnology and Guangzhou Institutes of Biomedicine and Health are pleased to present: Genomic Technologies and Biomaterials for Understanding Disease June 23-24, 2014 Co-located at 2014 BIO International Convention, San Diego Convention Center, San Diego, CA, USA Click here for more information or to register for this conference today! | | | | | | | | | | | | | | | | Career gaps: Maternity muddle ▶ | | | The support available for childbirth and rearing varies wildly. 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