The ISME Journal - Table of Contents alert Volume 8 Issue 8

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TABLE OF CONTENTS Volume 8, Issue 8 (August 2014) In this issue Winogradsky Review Original Articles Short Communication Corrigendum Also new AOP Sign up for e-alerts Recommend to your library Web feed Subscribe Advertisement A new online open access multi-and interdisciplinary journal dedicated to publishing the finest research on microbial biofilms and microbiomes. Part of the Nature Partner Journals portfolio - a new series of online open access journals published in collaboration with world-renowned international partners.   Winogradsky Review Top INTEGRATED GENOMICS AND POST-GENOMICS APPROACHES IN MICROBIAL ECOLOGY Implications of streamlining theory for microbial ecology Stephen J Giovannoni, J Cameron Thrash and Ben Temperton ISME J 2014 8: 1553-1565; advance online publication, April 17, 2014; 10.1038/ismej.2014.60 Abstract | Full Text Original Articles Top MICROBIAL POPULATION AND COMMUNITY ECOLOGY Bacteria, phages and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations Torey Looft, Heather K Allen, Brandi L Cantarel, Uri Y Levine, Darrell O Bayles, David P Alt, Bernard Henrissat and Thaddeus B Stanton ISME J 2014 8: 1566-1576; advance online publication, February 13, 2014; 10.1038/ismej.2014.12 Abstract | Full Text Taxonomical and functional microbial community selection in soybean rhizosphere Lucas W Mendes, Eiko E Kuramae, Acácio A Navarrete, Johannes A van Veen and Siu M Tsai ISME J 2014 8: 1577-1587; advance online publication, February 20, 2014; 10.1038/ismej.2014.17 Abstract | Full Text Molecular epidemiology and population structure of the honey bee brood pathogen Melissococcus plutonius OPEN Giles E Budge, Mark D F Shirley, Benjamin Jones, Emiline Quill, Victoria Tomkies, Edward J Feil, Mike A Brown and Edward G Haynes ISME J 2014 8: 1588-1597; advance online publication, March 6, 2014; 10.1038/ismej.2014.20 Abstract | Full Text The effect of ecological and temporal factors on the composition of Bartonella infection in rodents and their fleas Ricardo Gutiérrez, Danny Morick, Carmit Cohen, Hadas Hawlena and Shimon Harrus ISME J 2014 8: 1598-1608; advance online publication, February 27, 2014; 10.1038/ismej.2014.22 Abstract | Full Text MICROBE-MICROBE AND MICROBE-HOST INTERACTIONS Human milk oligosaccharides shorten rotavirus-induced diarrhea and modulate piglet mucosal immunity and colonic microbiota Min Li, Marcia H Monaco, Mei Wang, Sarah S Comstock, Theresa B Kuhlenschmidt, George C Fahey Jr, Michael J Miller, Mark S Kuhlenschmidt and Sharon M Donovan ISME J 2014 8: 1609-1620; advance online publication, February 13, 2014; 10.1038/ismej.2014.10 Abstract | Full Text Reset of a critically disturbed microbial ecosystem: faecal transplant in recurrent Clostridium difficile infection Susana Fuentes, Els van Nood, Sebastian Tims, Ineke Heikamp-de Jong, Cajo JF ter Braak, Josbert J Keller, Erwin G Zoetendal and Willem M de Vos ISME J 2014 8: 1621-1633; advance online publication, February 27, 2014; 10.1038/ismej.2014.13 Abstract | Full Text Life in an unusual intracellular niche: a bacterial symbiont infecting the nucleus of amoebae OPEN Frederik Schulz, Ilias Lagkouvardos, Florian Wascher, Karin Aistleitner, Rok Kostanjšek and Matthias Horn ISME J 2014 8: 1634-1644; advance online publication, February 6, 2014; 10.1038/ismej.2014.5 Abstract | Full Text INTEGRATED GENOMICS AND POST-GENOMICS APPROACHES IN MICROBIAL ECOLOGY Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea Timothy J Williams, Michelle A Allen, Matthew Z DeMaere, Nikos C Kyrpides, Susannah G Tringe, Tanja Woyke and Ricardo Cavicchioli ISME J 2014 8: 1645-1658; advance online publication, February 20, 2014; 10.1038/ismej.2014.18 Abstract | Full Text Community-wide transcriptome of the oral microbiome in subjects with and without periodontitis Ana E Duran-Pinedo, Tsute Chen, Ricardo Teles, Jacqueline R Starr, Xiaoshan Wang, Keerthana Krishnan and Jorge Frias-Lopez ISME J 2014 8: 1659-1672; advance online publication, March 6, 2014; 10.1038/ismej.2014.23 Abstract | Full Text MICROBIAL ENGINEERING Hydrogenase-independent uptake and metabolism of electrons by the archaeon Methanococcus maripaludis Svenja T Lohner, Jörg S Deutzmann, Bruce E Logan, John Leigh and Alfred M Spormann ISME J 2014 8: 1673-1681; advance online publication, May 20, 2014; 10.1038/ismej.2014.82 Abstract | Full Text GEOMICROBIOLOGY AND MICROBIAL CONTRIBUTIONS TO GEOCHEMICAL CYCLES Electric coupling between distant nitrate reduction and sulfide oxidation in marine sediment OPEN Ugo Marzocchi, Daniela Trojan, Steffen Larsen, Rikke Louise Meyer, Niels Peter Revsbech, Andreas Schramm, Lars Peter Nielsen and Nils Risgaard-Petersen ISME J 2014 8: 1682-1690; advance online publication, February 27, 2014; 10.1038/ismej.2014.19 Abstract | Full Text Correlation between viral production and carbon mineralization under nitrate-reducing conditions in aquifer sediment Donald Pan, Rachel Watson, Dake Wang, Zheng Huan Tan, Daniel D Snow and Karrie A Weber ISME J 2014 8: 1691-1703; advance online publication, March 27, 2014; 10.1038/ismej.2014.38 Abstract | Full Text MICROBIAL ECOLOGY AND FUNCTIONAL DIVERSITY OF NATURAL HABITATS Differential contributions of archaeal ammonia oxidizer ecotypes to nitrification in coastal surface waters Jason M Smith, Karen L Casciotti, Francisco P Chavez and Christopher A Francis ISME J 2014 8: 1704-1714; advance online publication, February 20, 2014; 10.1038/ismej.2014.11 Abstract | Full Text Fine-scale spatial patterns in bacterial community composition and function within freshwater ponds Gavin Lear, Julia Bellamy, Bradley S Case, Jack E Lee and Hannah L Buckley ISME J 2014 8: 1715-1726; advance online publication, February 27, 2014; 10.1038/ismej.2014.21 Abstract | Full Text Discovery of a SAR11 growth requirement for thiamin’s pyrimidine precursor and its distribution in the Sargasso Sea Paul Carini, Emily O Campbell, Jeff Morré, Sergio A Sañudo-Wilhelmy, J Cameron Thrash, Samuel E Bennett, Ben Temperton, Tadhg Begley and Stephen J Giovannoni ISME J 2014 8: 1727-1738; advance online publication, April 29, 2014; 10.1038/ismej.2014.61 Abstract | Full Text The mid-domain effect in ectomycorrhizal fungi: range overlap along an elevation gradient on Mount Fuji, Japan Yumiko Miyamoto, Takashi Nakano, Masahira Hattori and Kazuhide Nara ISME J 2014 8: 1739-1746; advance online publication, March 13, 2014; 10.1038/ismej.2014.34 Abstract | Full Text Short Communication Top MICROBIAL ENGINEERING A thermodynamic theory of microbial growth Elie Desmond-Le Quéméner and Théodore Bouchez ISME J 2014 8: 1747-1751; advance online publication, February 13, 2014; 10.1038/ismej.2014.7 Abstract | Full Text Corrigendum Top Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea Timothy J Williams, Michelle A Allen, Matthew Z DeMaere, Nikos C Kyrpides, Susannah G Tringe, Tanja Woyke and Ricardo Cavicchioli ISME J 2014 8: 1752; 10.1038/ismej.2014.65 Full Text A novel approach, based on BLSOMs (Batch Learning Self-Organizing Maps), to the microbiome analysis of ticks Ryo Nakao, Takashi Abe, Ard M Nijhof, Seigo Yamamoto, Frans Jongejan, Toshimichi Ikemura and Chihiro Sugimoto ISME J 2014 8: 1752; 10.1038/ismej.2014.83 Full Text Natureevents is a fully searchable, multi-disciplinary database designed to maximise exposure for events organisers. 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