| | | Volume 512 Number 7513 | | | | nature | | The science that matters. Every week. | | | | | | | | | | |  | | | APPLY TODAY for the 2014 ONCOLOGY RESEARCH GRANT. Together with Illumina, we're giving two deserving researchers the power to tap into the wealth of genomic data locked within FFPE samples using an innovative technique developed by EA | Quintiles using Illumina's RNA Access method. Unleash the power of your research with RNA-seq and DNA Methylation. | | | | | | | | Jump to the content that matters to you | | | | | | | | | | | | | | | Neuropsychosocial profiles of current and future adolescent alcohol misusers | | Many factors contribute to risk of alcohol abuse but their relative importance is difficult to quantify. Robert Whelan et al. constructed models of current and future adolescent binge drinking using data from the IMAGEN project, a study of risk-taking behaviour in over 2,000 teenagers recruited at age 14 from the United Kingdom, Ireland, France and Germany. A key finding is that personality factors are – surprisingly – not particularly useful predictors of future alcohol misuse. But neurodevelopmental immaturity, functional indicators in the brain, sexual experience and prenatal alcohol exposure are associated with current and future binge drinking. | | | | | | | | | | | | | Limits on fundamental limits to computation | | Computers have evolved at a remarkable rate for fifty years, roughly in line with Gordon Moore's prediction that the number of transistors in a dense integrated circuit would double approximately every two years. The rate of 'Moore scaling' is slowing down and other physical limits are looming, but new technologies are on the way. In this Review Igor Markov takes a fresh look at the fundamental limits at various levels, from device to complete system levels. He argues that the study of the limits of fundamental limits to computation can lead to new insights for emerging technologies. | | | | | | | | | | | | | Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA | | Human populations living in the Tibetan uplands have had many thousands of years to adapt to life at a high altitude. The hypoxia pathway gene EPAS1 was shown previously to be associated with this adaptation. This study of the DNA sequence of the chromosomal region around EPAS1 in Tibetan and Han Chinese individuals has arrived at a surprising and important result. The unusual haplotype structure of the Tibetan individuals appears to have been due to the introduction of DNA from Denisovans, a Homo species or subspecies known from a few high-altitude fossil discoveries in Siberia. | | | | | | | | | | | |  | | | An Atlas of Genetic Influences on Human Blood Metabolites "Metabolomics...an excellent way of understanding individual uniqueness and..." - Craig Venter A new publication in Nature Genetics reveals how metabolomic profiling coupled with genomics data yields new insight into diseases, potential biomarkers and drug treatments. | | | | | | | | | | | | | | | | | In this week's podcast: piles of rubble in space, a caution about epigenetics, pregnancy and blame, and the anatomy of an earthquake. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Save the children ▶ | | | | Infants and young people are being traumatized by armed conflict in their countries. Their resulting mental illnesses must be addressed, for the good of both the individuals and their society. | | | | | | | | | | | | Future computing ▶ | | | | Pushing the boundaries of current computing technologies will show the way to new ones. | | | | | | | | | | | | | | | | | | | | | | | | Seven days: 8–14 August 2014 ▶ | | | | The week in science: Ebola declared an international public-health emergency; power-cut at UK’s Antarctic research station; and Rosetta space probe catches up with a comet. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Society: Don't blame the mothers ▶ | | | | Careless discussion of epigenetic research on how early life affects health across generations could harm women, warn Sarah S. Richardson and colleagues. | | | | | | | | | | | | | | | | | | | | Books in brief ▶ | | | | Barbara Kiser reviews five of the week’s best science picks. | | | | | | | | | | | | | | | | | | | | | |  | | | Nature Outlook Assessing Science
Australia and New Zealand might be neighbours, but their programmes of research assessment are very different. Focusing on the tools and methods used to measure the quality and impact of science in Australia and New Zealand should inform similar debates throughout the scientific world. Access the Outlook free online for six months. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | AhR sensing of bacterial pigments regulates antibacterial defence ▶ | | | | Pedro Moura-Alves, Kellen Faé, Erica Houthuys et al. | | | | The mammalian aryl hydrocarbon receptor (known to sense environmental pollutants) is shown to also have a role as a pattern recognition receptor in sensing bacterial virulence factors, resulting in an antibacterial response and activation of innate and natural defences. | | | | | | | | | | | | | | | | | | | | | | | | | | | | Enhanced neonatal Fc receptor function improves protection against primate SHIV infection ▶ | | | | Sung-Youl Ko, Amarendra Pegu, Rebecca S. Rudicell et al. | | | | A mutation in VRC01, a broadly neutralizing, HIV-1-specific antibody, confers enhanced binding to the neonatal Fc receptor, increasing the antibody half-life in the serum and localization in mucosal tissues, where it provides superior protection against rectal simian HIV-1 infection in macaques. | | | | | | | | | | | | Jam1a–Jam2a interactions regulate haematopoietic stem cell fate through Notch signalling ▶ | | | | Isao Kobayashi, Jingjing Kobayashi-Sun, Albert D. Kim et al. | | | | Notch signalling has a key role in the generation of haematopoietic stem cells (HSCs) during vertebrate development; here two adhesion molecules, Jam1a and Jam2a, are shown to be essential for the contact between precursors of HSCs and the somite during embryonic migration, and the Jam1a–Jam2a interaction is shown to be needed to transmit the Notch signal and produce HSCs. | | | | | | | | | | | | Haematopoietic stem cell induction by somite-derived endothelial cells controlled by meox1 ▶ | | | | Phong Dang Nguyen, Georgina Elizabeth Hollway, Carmen Sonntag et al. | | | | A new somite compartment, called the endotome, that contributes to the formation of the embryonic dorsal aorta by providing endothelial progenitors is identified here; endotome-derived endothelial progenitors, whose formation is regulated by the activity of the meox1 gene, induce haematopoietic stem cell formation upon colonization of the nascent dorsal aorta. | | | | | | | | | | | | | | | | | | | | | | | | Clonal evolution in breast cancer revealed by single nucleus genome sequencing ▶ | | | | Yong Wang, Jill Waters, Marco L. Leung et al. | | | | To investigate genomic diversity within tumours, a new type of whole-genome and exome single cell sequencing has been developed using G2/M nuclei; the technique was used to sequence single nuclei from an oestrogen-positive breast cancer and a triple-negative ductal carcinoma—aneuploidy rearrangements emerged as early events in tumour formation and then point mutations evolved gradually over time. | | | | | | | | | | | | Crystal structure of the human COP9 signalosome ▶ | | | | Gondichatnahalli M. Lingaraju, Richard D. Bunker, Simone Cavadini et al. | | | | The COP9 signalosome (CSN) complex regulates cullin–RING E3 ubiquitin ligases—the largest class of ubiquitin ligase enzymes, which are involved in a multitude of regulatory processes; here, the crystal structure of the entire human CSN holoenzyme is presented. | | | | | | | | | | | | Three-dimensional structure of human γ-secretase ▶ | | | | Peilong Lu, Xiao-chen Bai, Dan Ma et al. | | | | The three-dimensional structure of intact human γ-secretase complex at 4.5 Å resolution is revealed by cryo-electron-microscopy single-particle analysis; the complex comprises a horseshoe-shaped transmembrane domain containing 19 transmembrane segments, and a large extracellular domain from nicastrin, which sits immediately above the hollow space formed by the horseshoe. | | | | | | | | | | | | Neuropsychosocial profiles of current and future adolescent alcohol misusers ▶ | | | | Robert Whelan, Richard Watts, Catherine A. Orr et al. | | | | Many factors have been proposed as contributors to risk of alcohol abuse, but quantifying their influence has been difficult; here a longitudinal study of a large sample of adolescents and machine learning are used to generate models of predictors of current and future alcohol abuse, assessing the relative contribution of many factors, including life history, individual personality differences, brain structure and genotype. | | | | | | | | | | | | A common Greenlandic TBC1D4 variant confers muscle insulin resistance and type 2 diabetes ▶ | | | | Ida Moltke, Niels Grarup, Marit E. Jørgensen et al. | | | | An association mapping study of type-2-diabetes-related quantitative traits in the Greenlandic population identified a common variant in TBC1D4 that increases plasma glucose levels and serum insulin levels after an oral glucose load and type 2 diabetes risk, with effect sizes several times larger than any previous findings of large-scale genome-wide association studies for these traits. | | | | | | | | | | | | Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA ▶ | | | | Emilia Huerta-Sánchez, Xin Jin, Asan et al. | | | | Admixture with other hominin species helped humans to adapt to high-altitude environments; the EPAS1 gene in Tibetan individuals has an unusual haplotype structure that probably resulted from introgression of DNA from Denisovan or Denisovan-related individuals into humans, and this haplotype is only found in Denisovans and Tibetans, and at low frequency among Han Chinese. | | | | | | | | | | | | Replication stress is a potent driver of functional decline in ageing haematopoietic stem cells ▶ | | | | Johanna Flach, Sietske T. Bakker, Mary Mohrin et al. | | | | Haematopoietic stem cell (HSC) function is known to degrade with age; here, replication stress is shown to be a potent driver of the functional decline of HSCs during physiological ageing in mice due to decreased expression of mini-chromosome maintenance helicase components and reduced activity of the DNA replication machinery. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Clonal evolution in breast cancer revealed by single nucleus genome sequencing ▶ | | | | Yong Wang, Jill Waters, Marco L. Leung et al. | | | | To investigate genomic diversity within tumours, a new type of whole-genome and exome single cell sequencing has been developed using G2/M nuclei; the technique was used to sequence single nuclei from an oestrogen-positive breast cancer and a triple-negative ductal carcinoma—aneuploidy rearrangements emerged as early events in tumour formation and then point mutations evolved gradually over time. | | | | | | | | | | | | Three-dimensional structure of human γ-secretase ▶ | | | | Peilong Lu, Xiao-chen Bai, Dan Ma et al. | | | | The three-dimensional structure of intact human γ-secretase complex at 4.5 Å resolution is revealed by cryo-electron-microscopy single-particle analysis; the complex comprises a horseshoe-shaped transmembrane domain containing 19 transmembrane segments, and a large extracellular domain from nicastrin, which sits immediately above the hollow space formed by the horseshoe. | | | | | | | | | | | | Neuropsychosocial profiles of current and future adolescent alcohol misusers ▶ | | | | Robert Whelan, Richard Watts, Catherine A. Orr et al. | | | | Many factors have been proposed as contributors to risk of alcohol abuse, but quantifying their influence has been difficult; here a longitudinal study of a large sample of adolescents and machine learning are used to generate models of predictors of current and future alcohol abuse, assessing the relative contribution of many factors, including life history, individual personality differences, brain structure and genotype. | | | | | | | | | | | | A common Greenlandic TBC1D4 variant confers muscle insulin resistance and type 2 diabetes ▶ | | | | Ida Moltke, Niels Grarup, Marit E. Jørgensen et al. | | | | An association mapping study of type-2-diabetes-related quantitative traits in the Greenlandic population identified a common variant in TBC1D4 that increases plasma glucose levels and serum insulin levels after an oral glucose load and type 2 diabetes risk, with effect sizes several times larger than any previous findings of large-scale genome-wide association studies for these traits. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Interacting supernovae from photoionization-confined shells around red supergiant stars ▶ | | | | Jonathan Mackey, Shazrene Mohamed, Vasilii V. Gvaramadze et al. | | | | A model in which the stellar wind of the fast-moving red supergiant Betelgeuse is photoionized by radiation from external sources can explain the dense, almost static shell recently discovered around the star, and predicts both that debris from Betelgeuse’s eventual supernova explosion will violently collide with the shell and that other red supergiants should have similar, but much more massive, shells. | | | | | | | | | | | | | | | | The origin of the local 1/4-keV X-ray flux in both charge exchange and a hot bubble ▶ | | | | M. Galeazzi, M. Chiao, M. R. Collier et al. | | | | The contribution of solar-wind ions exchanging electrons with helium and hydrogen near the Sun is shown to be only about 40 per cent of the 1/4-keV X-ray flux observed in the Galactic plane; this supports the existence of a local ‘hot bubble’ filled with X-ray-emitting gas, accounting for the rest of the flux. | | | | | | | | | | | | | | | | Formation of monatomic metallic glasses through ultrafast liquid quenching ▶ | | | | Li Zhong, Jiangwei Wang, Hongwei Sheng et al. | | | | Metallic liquids of single elements have been successfully vitrified to their glassy states by achieving an ultrafast quenching rate in a new experimental design, of which the process has been monitored and studied by a combination of in situ transmission electron microscopy and atoms-to-continuum computer modelling. | | | | | | | | | | | | The tidal–rotational shape of the Moon and evidence for polar wander ▶ | | | | Ian Garrick-Bethell, Viranga Perera, Francis Nimmo et al. | | | | Analysis of the Moon's topography reveals that when its largest basins are removed, the lunar shape is consistent with processes controlled by early Earth tides, and implies a reorientation of the Moon's principal shape axes. | | | | | | | | | | | | | | | | Limits on fundamental limits to computation ▶ | | | | Igor L. Markov | | | | To evaluate the promise of potential computing technologies, this review examines a wide range of fundamental limits, such as to performance, power consumption, size and cost, from the device level to the system level. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Continuing megathrust earthquake potential in Chile after the 2014 Iquique earthquake ▶ | | | | Gavin P. Hayes, Matthew W. Herman, William D. Barnhart et al. | | | | The 2014 Iquique event was not the earthquake that had been expected to fill the regional seismic gap; given that significant sections of the northern Chile subduction zone have not ruptured in almost 150 years, it is likely that future megathrust earthquakes will occur south and potentially north of the 2014 Iquique sequence. | | | | | | | | | | | | | | | | | | | | The tidal–rotational shape of the Moon and evidence for polar wander ▶ | | | | Ian Garrick-Bethell, Viranga Perera, Francis Nimmo et al. | | | | Analysis of the Moon's topography reveals that when its largest basins are removed, the lunar shape is consistent with processes controlled by early Earth tides, and implies a reorientation of the Moon's principal shape axes. | | | | | | | | Interacting supernovae from photoionization-confined shells around red supergiant stars ▶ | | | | Jonathan Mackey, Shazrene Mohamed, Vasilii V. Gvaramadze et al. | | | | A model in which the stellar wind of the fast-moving red supergiant Betelgeuse is photoionized by radiation from external sources can explain the dense, almost static shell recently discovered around the star, and predicts both that debris from Betelgeuse’s eventual supernova explosion will violently collide with the shell and that other red supergiants should have similar, but much more massive, shells. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Scientific Data: Now Live Scientific Data is an open-access, peer-reviewed publication and exists to help you publish, discover and reuse research data. It is now live so go visit nature.com/scientificdata to discover more and view our Data Descriptors. | | | | | | | | | | | | | | | | | | | | | | | | | | | | Careers related news & comment | | | | | | | | | | | | | | | | | | | | | |  naturejobs.com Science jobs of the week | | | | | | | | | | | | | | | | | | | | No matter what your career stage, student, postdoc or senior scientist, you will find articles on naturejobs.com to help guide you in your science career. Keep up-to-date with the latest sector trends, vote in our reader poll and sign-up to receive the monthly Naturejobs newsletter. | | | | | | | | | | • Natureevents Directory featured events | | | | | | | | | |  natureevents directory featured events | | | | | | | | | | Natureevents Directory is the premier resource for scientists looking for the latest scientific conferences, courses, meetings and symposia. Featured across Nature Publishing Group journals and centrally at natureevents.com it is an essential reference guide to scientific events worldwide. | | | | | | | | | | | | | | | | | | | | | | | | Your email address is in the Nature mailing list. You have been sent this Table of Contents Alert because you have opted in to receive it. You can change or discontinue your e-mail alerts at any time, by modifying your preferences on your nature.com account at: www.nature.com/nams/svc/myaccount (You will need to log in to be recognised as a nature.com registrant). For further technical assistance, please contact subscriptions@nature.com For other enquiries, please contact feedback@nature.com | Nature Publishing Group | 75 Varick Street, 9th floor | New York | NY 10013-1917 | USA
Nature Publishing Group's offices: Principal offices: London - New York - Tokyo Worldwide offices: Basingstoke - Boston - Buenos Aires - Delhi - Hong Kong - Madrid - Melbourne - Munich - Paris - San Francisco - Seoul - Washington DC Macmillan Publishers Limited is a company incorporated in England and Wales under company number 785998 and whose registered office is located at Brunel Road, Houndmills, Basingstoke, Hampshire RG21 6XS. © 2014 Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved. | | | |
No comments:
Post a Comment
Keep a civil tongue.