Scientific Reports Biology Table of Contents e-alert: 30 September 2014

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30 September 2014      • Visit Scientific Reports • Submit your manuscript to Scientific Reports     Welcome to your Table of Contents e-alert for Scientific Reports               Biological Sciences               Common and unique cis-acting elements mediate xanthotoxin and flavone induction of the generalist P450 CYP321A1 ▶     Chunni Zhang, Andrew Wong, Yalin Zhang et al.     How polyphagous herbivores up-regulate their counterdefense genes in response to a broad range of structurally different allelochemicals remains largely unknown. To test whether …             Loops and autonomy promote evolvability of ecosystem networks ▶     Jianxi Luo     The structure of ecological networks, in particular food webs, determines their ability to evolve further, i.e. evolvability. The knowledge about how food web evolvability is …             Synthetic vanillate-regulated promoter for graded gene expression in Sphingomonas ▶     Andreas Kaczmarczyk, Julia A. Vorholt, Anne Francez-Charlot     Regulated promoters are an important basic genetic tool allowing, for example, gene-dosage and gene depletion studies. We have previously described a cumate-inducible promoter (P…             MicroRNA-mediated networks underlie immune response regulation in papillary thyroid carcinoma ▶     Chen-Tsung Huang, Yen-Jen Oyang, Hsuan-Cheng Huang et al.     Papillary thyroid carcinoma (PTC) is a common endocrine malignancy with low death rate but increased incidence and recurrence in recent years. MicroRNAs (miRNAs) are small …             Single-molecule real-time detection of telomerase extension activity ▶     Helen Hwang, Patricia Opresko, Sua Myong     The ends of eukaryotic chromosomes are capped by telomeres which consist of tandem G-rich DNA repeats stabilized by the shelterin protein complex. Telomeres shorten progressively …             Role of G-protein-coupled Receptor-related Genes in Insecticide Resistance of the Mosquito, Culex quinquefasciatus ▶     Ting Li, Lena Liu, Lee Zhang et al.     G-protein-coupled receptors regulate signal transduction pathways and play diverse and pivotal roles in the physiology of insects, however, the precise function of GPCRs in …             High order intra-strand partial symmetry increases with organismal complexity in animal evolution ▶     Shengqin Wang, Jing Tu, Zhongwei Jia et al.     For sufficiently long genomic sequence, the frequency of any short nucleotide fragment on one strand is approximately equal to the frequency of its reverse complement on the same …             Co-detection and sequencing of genes and transcripts from the same single cells facilitated by a microfluidics platform ▶     Lin Han, Xiaoyuan Zi, Lana X. Garmire et al.     Despite the recent advance of single-cell gene expression analyses, co-measurement of both genomic and transcriptional signatures at the single-cell level has not been realized. …             Quantitative High-Throughput Profiling of Environmental Chemicals and Drugs that Modulate Farnesoid X Receptor ▶     Chia-Wen Hsu, Jinghua Zhao, Ruili Huang et al.     The farnesoid X receptor (FXR) regulates the homeostasis of bile acids, lipids, and glucose. Because endogenous chemicals bind and activate FXR, it is important to examine which …             Real-time imaging of pulvinus bending in Mimosa pudica ▶     Kahye Song, Eunseop Yeom, Sang Joon Lee     Mimosa pudica is a plant that rapidly shrinks its body in response to external stimuli. M. pudica does not perform merely simple movements, but exhibits a variety of movements …             Sequence-motif Detection of NAD(P)-binding Proteins: Discovery of a Unique Antibacterial Drug Target ▶     Yun Hao Hua, Chih Yuan Wu, Karen Sargsyan et al.     Many enzymes use nicotinamide adenine dinucleotide or nicotinamide adenine dinucleotide phosphate (NAD(P)) as essential coenzymes. These enzymes often do not share significant …             Activity of the novel fungicide SYP-Z048 against plant pathogens ▶     Fengping Chen, Ping Han, Pengfei Liu et al.     In in vitro tests with 18 plant pathogens, the fungicide 3-[5-(4-chlorophenyl)-2,3-dimethyl-3-isoxazolidinyl] pyridine (SYP-Z048) was highly effective on inhibiting mycelial …             Testing an unusual in vivo vessel network model: a method to study angiogenesis in the colonial tunicate Botryllus schlosseri ▶     Fabio Gasparini, Federico Caicci, Francesca Rigon et al.     Tunicates are the closest relatives to vertebrates and include the only chordate species able to reproduce both sexually and asexually. The colonial tunicate Botryllus schlosseri …             Characterizations of how species mediate ecosystem properties require more comprehensive functional effect descriptors ▶     R. Hale, M. N. Mavrogordato, T. J. Tolhurst et al.     The importance of individual species in mediating ecosystem process and functioning is generally accepted, but categorical descriptors that summarize species-specific …             Global Information and Mobility Support Coordination Among Humans ▶     Alberto Antonioni, Angel Sanchez, Marco Tomassini     Coordination among different options is key for a functioning and efficient society. However, often coordination failures arise, resulting in serious problems both at the …             Hes7 3′UTR is required for somite segmentation function ▶     Takeshi Fujimuro, Takaaki Matsui, Yasuhide Nitanda et al.     A set of genes in the posterior end of developing mouse embryos shows oscillatory expression, thereby regulating periodic somite segmentation. Although the mechanism for …             Symmetric curvature descriptors for label-free analysis of DNA ▶     Renato Buzio, Luca Repetto, Francesca Giacopelli et al.     High-resolution microscopy techniques such as electron microscopy, scanning tunnelling microscopy and atomic force microscopy represent well-established, powerful tools for the …             The three-way switch operation of Rac1/RhoA GTPase-based circuit controlling amoeboid-hybrid-mesenchymal transition ▶     Bin Huang, Mingyang Lu, Mohit Kumar Jolly et al.     Metastatic carcinoma cells exhibit at least two different phenotypes of motility and invasion - amoeboid and mesenchymal. This plasticity poses a major clinical challenge for …             Do Fish Perceive Illusory Motion? ▶     Simone Gori, Christian Agrillo, Marco Dadda et al.     Motion illusion refers to a perception of motion that is absent or different in the physical stimulus. These illusions are a powerful non-invasive tool for understanding the …             Reduction of intraarticular adhesion by topical application of colchicine following knee surgery in rabbits ▶     Yu Sun, Yuan Liang, Jinlong Hu et al.     The aim of this study was to investigate the efficacy of topical application of colchicine in reducing intraarticular adhesion in rabbits. Thirty-six rabbits were randomly and …             Homotypic dimerization of a maltose kinase for molecular scaffolding ▶     Jun Li, Xiaotao Guan, Neil Shaw et al.     Mycobacterium tuberculosis (Mtb) uses maltose-1-phosphate to synthesize α-glucans that make up the major component of its outer capsular layer. Maltose kinase (MaK) catalyzes …             Transcriptional regulation of adrenomedullin by oncostatin M in human astroglioma cells: Implications for tumor invasion and migration ▶     Seul Ye Lim, So-Hee Ahn, Hyunju Park et al.     Adrenomedullin (ADM), a secretory peptide with multiple functions in physiological to pathological conditions, is upregulated in several human cancers, including brain, breast, …             Differential regulation of non-protein coding RNAs from Prader-Willi Syndrome locus ▶     Chenna R. Galiveti, Carsten A. Raabe, Zoltán Konthur et al.     Prader-Willi Syndrome (PWS) is a neurogenetic disorder caused by the deletion of imprinted genes on the paternally inherited human chromosome 15q11-q13. This locus harbours a …             GADD45γ induces G2/M arrest in human pharynx and nasopharyngeal carcinoma cells by cucurbitacin E ▶     Chao-Ming Hung, Chi-Chang Chang, Chen-Wei Lin et al.     Nasopharyngeal carcinoma (NPC) is a common form of malignant cancer, for which radiotherapy or chemotherapy are the main treatment methods. Cucurbitacin E (CuE) is a natural …                 Nature Communications soon to be fully open access: From 20th October Nature Communications, will become fully open access for all new submissions. If an author has a manuscript they wish to submit to the journal via the subscription route, they must submit before 20th October. After this date all new submissions, if accepted, will be published open access and an article processing charge (APC) will apply. 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